Abd El-Aziz M M, El-Ashry M F, Chan W M, Chong K L, Barragan I, Antiñolo G, Pang C P, Bhattacharya S S
Department of Molecular Genetics, Institute of Ophthalmology, London EC1V 9EL, UK.
Ann Hum Genet. 2007 May;71(Pt 3):281-94. doi: 10.1111/j.1469-1809.2006.00333.x. Epub 2006 Nov 29.
Autosomal recessive retinitis pigmentosa (arRP) is the commonest form of RP worldwide. To date 22 loci have been implicated in the pathogenesis of this disease; however none of these loci independently account for a significant proportion of recessive RP. Linkage studies of arRP in consanguineous families have been mainly based on homozygosity mapping, but this strategy cannot be applied in the case of non-consanguineous families. Therefore, we implemented a systematic approach for identifying the disease locus in three non-consanguineous Chinese families with arRP. Initially, linkage analysis using SNPs/microsatellite markers or mutation screening of known arRP genes excluded all loci/genes except RP25 on chromosome 6. Subsequently a whole genome scan for the three families using the 10K GeneChip Mapping Array was performed, in order to identify the possible disease locus. To the best of our knowledge this is the first report on the utilisation of the 10K GeneChip to study linkage in non-consanguineous Chinese arRP. This analysis indicates that the studied families are probably linked to the RP25 locus, a well defined arRP locus in other populations. The identification of another ethnic group linked to RP25 is highly suggestive that this represents a major locus for arRP.
常染色体隐性遗传性视网膜色素变性(arRP)是全球最常见的视网膜色素变性形式。迄今为止,已有22个基因座与该疾病的发病机制相关;然而,这些基因座中没有一个能独立解释相当比例的隐性视网膜色素变性病例。对近亲家庭中arRP的连锁研究主要基于纯合性定位,但这种策略不适用于非近亲家庭。因此,我们采用了一种系统方法来确定三个患有arRP的非近亲中国家庭中的疾病基因座。最初,使用单核苷酸多态性(SNP)/微卫星标记进行连锁分析或对已知的arRP基因进行突变筛查,排除了除6号染色体上的RP25以外的所有基因座/基因。随后,使用10K基因芯片图谱阵列对这三个家庭进行了全基因组扫描,以确定可能的疾病基因座。据我们所知,这是首次报道利用10K基因芯片研究非近亲中国arRP的连锁情况。该分析表明,所研究的家庭可能与RP25基因座连锁,RP25是其他人群中一个明确的arRP基因座。另一个与RP25连锁的种族群体的鉴定强烈表明,这代表了arRP的一个主要基因座。