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人类基因突变数据库(HGMD)及其在个性化基因组学和分子进化领域的应用。

The Human Gene Mutation Database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution.

作者信息

Stenson Peter D, Ball Edward V, Mort Matthew, Phillips Andrew D, Shaw Katy, Cooper David N

机构信息

Cardiff University, Cardiff, United Kingdom.

出版信息

Curr Protoc Bioinformatics. 2012 Sep;Chapter 1:1.13.1-1.13.20. doi: 10.1002/0471250953.bi0113s39.

Abstract

The Human Gene Mutation Database (HGMD) constitutes a comprehensive core collection of data on germ-line mutations in nuclear genes underlying or associated with human inherited disease (http://www.hgmd.org). Data cataloged include single-base-pair substitutions in coding, regulatory, and splicing-relevant regions, micro-deletions and micro-insertions, indels, and triplet repeat expansions, as well as gross gene deletions, insertions, duplications, and complex rearrangements. Each mutation is entered into HGMD only once, in order to avoid confusion between recurrent and identical-by-descent lesions. By March 2012, the database contained in excess of 123,600 different lesions (HGMD Professional release 2012.1) detected in 4,514 different nuclear genes, with new entries currently accumulating at a rate in excess of 10,000 per annum. ∼6,000 of these entries constitute disease-associated and functional polymorphisms. HGMD also includes cDNA reference sequences for more than 98% of the listed genes.

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