Stenson Peter D, Ball Edward V, Mort Matthew, Phillips Andrew D, Shiel Jacqueline A, Thomas Nick S T, Abeysinghe Shaun, Krawczak Michael, Cooper David N
Institute of Medical Genetics, University of Wales College of Medicine, Heath Park, Cardiff, UK.
Hum Mutat. 2003 Jun;21(6):577-81. doi: 10.1002/humu.10212.
The Human Gene Mutation Database (HGMD) constitutes a comprehensive core collection of data on germ-line mutations in nuclear genes underlying or associated with human inherited disease (www.hgmd.org). Data catalogued includes: single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation is entered into HGMD only once in order to avoid confusion between recurrent and identical-by-descent lesions. By March 2003, the database contained in excess of 39,415 different lesions detected in 1,516 different nuclear genes, with new entries currently accumulating at a rate exceeding 5,000 per annum. Since its inception, HGMD has been expanded to include cDNA reference sequences for more than 87% of listed genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases. Although HGMD has recently entered into a licensing agreement with Celera Genomics (Rockville, MD), mutation data will continue to be made freely available via the Internet.
人类基因突变数据库(HGMD)构成了一个关于人类遗传性疾病相关或潜在的核基因种系突变数据的综合核心集(www.hgmd.org)。编入目录的数据包括:编码区、调控区和剪接相关区域的单碱基对替换;微缺失和微插入;插入缺失;三联体重复扩增以及大片段缺失、插入、重复和复杂重排。每个突变在HGMD中仅录入一次,以避免复发性病变和同源性相同病变之间的混淆。到2003年3月,该数据库包含在1516个不同核基因中检测到的超过39415种不同病变,目前新条目以每年超过5000条的速度积累。自成立以来,HGMD已扩展到包括87%以上所列基因的cDNA参考序列、剪接连接序列、疾病相关和功能多态性,以及与公开可用的在线位点特异性突变数据库中的数据的链接。尽管HGMD最近与赛莱拉基因组公司(马里兰州罗克维尔)签订了许可协议,但突变数据仍将通过互联网免费提供。