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来自洋葱伯克霍尔德菌AMMD的一种新型N-取代支链L-氨基酸双加氧酶的表达、纯化、结晶及初步X射线分析。

Expression, purification, crystallization and preliminary X-ray analysis of a novel N-substituted branched-chain L-amino-acid dioxygenase from Burkholderia ambifaria AMMD.

作者信息

Qin Hui-Min, Miyakawa Takuya, Nakamura Akira, Xue You-Lin, Kawashima Takashi, Kasahara Takuya, Hibi Makoto, Ogawa Jun, Tanokura Masaru

机构信息

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Tokyo 113-8657, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Sep 1;68(Pt 9):1067-9. doi: 10.1107/S1744309112031508. Epub 2012 Aug 30.

Abstract

Ferrous ion- and α-ketoglutarate-dependent dioxygenase from Burkholderia ambifaria AMMD (SadA) catalyzes the C3-hydroxylation of N-substituted branched-chain L-amino acids, especially N-succinyl-L-leucine, coupled to the conversion of α-ketoglutarate to succinate and CO(2). SadA was expressed in Escherichia coli, purified and crystallized using the sitting-drop vapour-diffusion method at 293 K. Crystals of selenomethionine-substituted SadA were obtained using a reservoir solution containing PEG 3000 as the precipitant at pH 9.5 and diffracted X-rays to 2.4 Å resolution. The crystal belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 49.3, b = 70.9, c = 148.2 Å. The calculated Matthews coefficient (V(M) = 2.1 Å(3) Da(-1), 41% solvent content) suggested that the crystal contains two molecules per asymmetric unit.

摘要

来自洋葱伯克霍尔德菌AMMD的亚铁离子和α-酮戊二酸依赖性双加氧酶(SadA)催化N-取代支链L-氨基酸的C3-羟基化反应,特别是N-琥珀酰-L-亮氨酸,同时伴随着α-酮戊二酸向琥珀酸和CO₂的转化。SadA在大肠杆菌中表达,通过坐滴气相扩散法在293 K下进行纯化和结晶。使用含有PEG 3000作为沉淀剂、pH为9.5的储液获得了硒代甲硫氨酸取代的SadA晶体,其X射线衍射分辨率达到2.4 Å。该晶体属于空间群P2(1)2(1)2(1),晶胞参数a = 49.3、b = 70.9、c = 148.2 Å。计算得到的马修斯系数(V(M) = 2.1 Å(3) Da(-1),溶剂含量为41%)表明,每个不对称单元的晶体包含两个分子。

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