Systematic Botany and Mycology, University of Munich, 80638 Munich, Germany.
Am J Bot. 2012 Sep;99(9):1501-12. doi: 10.3732/ajb.1200104.
Understanding the flexibility of monocot genomes requires a phylogenetic framework, which so far is available for few of the ca. 2800 genera. Here we use a molecular tree for the South American genus Alstroemeria to place karyological information, including fluorescent in situ hybridization (FISH) signals, in an explicit evolutionary context.
From a phylogeny based on plastid, nuclear, and mitochondrial sequences for most species of Alstroemeria, we selected early-branching (Chilean) and derived (Brazilian) species for which we obtained 18S-25S and 5S rDNA FISH signals; we also analyzed chromosome numbers, 1C-values, and telomere FISH signals (in two species).
Chromosome counts for Alstroemeria cf. rupestris and A. pulchella confirm 2n = 16 as typical of the genus, which now has chromosomes counted for 29 of its 78 species. The rDNA sites are polymorphic both among and within species, and interstitial telomeric sites in Alstroemeria cf. rupestris suggest chromosome fusion.
In spite of a constant chromosome number, closely related species of Alstroemeria differ drastically in their rDNA, indicating rapid increase, decrease, or translocations of these genes. Previously proposed Brazilian and Chilean karyotype groups are not natural, and the n = 8 chromosomes in Alstroemeria compared to n = 9 in its sister genus Bomarea may result from a Robertsonian fusion.
要理解单子叶植物基因组的灵活性,需要一个系统发育框架,但目前只有约 2800 个属中的少数几个有这样的框架。在这里,我们使用南美孤挺花属的分子树,将包括荧光原位杂交(FISH)信号在内的核型信息置于明确的进化背景中。
基于大多数孤挺花属物种的质体、核和线粒体序列构建的系统发育树,我们选择了早期分支(智利)和衍生(巴西)的物种,为这些物种获得了 18S-25S 和 5S rDNA FISH 信号;我们还分析了染色体数目、1C 值和端粒 FISH 信号(在两个物种中)。
对孤挺花 cf. rupestris 和 A. pulchella 的染色体计数证实了 2n = 16 是该属的典型特征,现在该属的 78 个物种中有 29 个的染色体被计数。rDNA 位点在种间和种内都是多态的,孤挺花 cf. rupestris 中的间插端粒位点表明染色体融合。
尽管染色体数目保持不变,但亲缘关系密切的孤挺花属物种在 rDNA 上有很大差异,表明这些基因的快速增加、减少或易位。以前提出的巴西和智利核型群不是自然的,与姐妹属 Bomarea 的 n = 9 相比,孤挺花属的 n = 8 染色体可能是罗伯逊易位的结果。