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脊索动物海鞘的遗传和基因组工具包。

Genetic and genomic toolbox of the chordate Ciona intestinalis.

机构信息

Center for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.

出版信息

Genetics. 2012 Sep;192(1):55-66. doi: 10.1534/genetics.112.140590.

DOI:10.1534/genetics.112.140590
PMID:22964837
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3430545/
Abstract

The experimental malleability and unique phylogenetic position of the sea squirt Ciona intestinalis as part of the sister group to the vertebrates have helped establish these marine chordates as model organisms for the study of developmental genetics and evolution. Here we summarize the tools, techniques, and resources available to the Ciona geneticist, citing examples of studies that employed such strategies in the elucidation of gene function in Ciona. Genetic screens, germline transgenesis, electroporation of plasmid DNA, and microinjection of morpholinos are all routinely employed, and in the near future we expect these to be complemented by targeted mutagenesis, homologous recombination, and RNAi. The genomic resources available will continue to support the design and interpretation of genetic experiments and allow for increasingly sophisticated approaches on a high-throughput, whole-genome scale.

摘要

海鞘(Ciona intestinalis)作为脊椎动物姐妹群的一部分,具有实验可塑性和独特的系统发育地位,这有助于将这些海洋脊索动物确立为发育遗传学和进化研究的模式生物。在这里,我们总结了适用于 Ciona 遗传学家的工具、技术和资源,并引用了利用这些策略阐明 Ciona 中基因功能的研究示例。遗传筛选、种系转基因、质粒 DNA 的电穿孔和 morpholino 的显微注射都是常规使用的方法,在不久的将来,我们预计这些方法将得到靶向诱变、同源重组和 RNAi 的补充。现有的基因组资源将继续支持遗传实验的设计和解释,并允许在高通量、全基因组范围内采用越来越复杂的方法。

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Rouxs Arch Dev Biol. 1993 Jan;203(1-2):104-112. doi: 10.1007/BF00539896.
2
Efficient targeted mutagenesis of the chordate Ciona intestinalis genome with zinc-finger nucleases.锌指核酸酶介导的脊索动物文昌鱼基因组的高效靶向突变。
Dev Growth Differ. 2012 Jun;54(5):535-45. doi: 10.1111/j.1440-169X.2012.01355.x. Epub 2012 May 28.
3
Coordinated regulation of cholinergic motor neuron traits through a conserved terminal selector gene.
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Int J Mol Sci. 2024 Dec 20;25(24):13631. doi: 10.3390/ijms252413631.
4
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Integr Comp Biol. 2024 Nov 21;64(5):1182-1193. doi: 10.1093/icb/icae108.
5
Cis-regulatory interfaces reveal the molecular mechanisms underlying the notochord gene regulatory network of Ciona.顺式调控界面揭示了海鞘脊索基因调控网络的分子机制。
Nat Commun. 2024 Apr 8;15(1):3025. doi: 10.1038/s41467-024-46850-3.
6
Serotonin Receptors and Their Involvement in Melanization of Sensory Cells in .血清素受体及其在感觉细胞黑化中的作用。
Cells. 2023 Apr 13;12(8):1150. doi: 10.3390/cells12081150.
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Front Cell Dev Biol. 2022 Jan 21;9:804032. doi: 10.3389/fcell.2021.804032. eCollection 2021.
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Elife. 2022 Jan 20;11:e73992. doi: 10.7554/eLife.73992.
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5
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Development. 2011 Mar;138(5):995-1004. doi: 10.1242/dev.061507.