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基因复制作为基因组适应不断变化的环境的一种机制。

Gene duplication as a mechanism of genomic adaptation to a changing environment.

机构信息

Institució Catalana de Recerca i Estudis Avançats, Centre for Genomic Regulation (CRG) and Universitat Pompeu Fabra, 88 Dr Aiguader, Barcelona 08003, Spain.

出版信息

Proc Biol Sci. 2012 Dec 22;279(1749):5048-57. doi: 10.1098/rspb.2012.1108. Epub 2012 Sep 12.

DOI:10.1098/rspb.2012.1108
PMID:22977152
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3497230/
Abstract

A subject of extensive study in evolutionary theory has been the issue of how neutral, redundant copies can be maintained in the genome for long periods of time. Concurrently, examples of adaptive gene duplications to various environmental conditions in different species have been described. At this point, it is too early to tell whether or not a substantial fraction of gene copies have initially achieved fixation by positive selection for increased dosage. Nevertheless, enough examples have accumulated in the literature that such a possibility should be considered. Here, I review the recent examples of adaptive gene duplications and make an attempt to draw generalizations on what types of genes may be particularly prone to be selected for under certain environmental conditions. The identification of copy-number variation in ecological field studies of species adapting to stressful or novel environmental conditions may improve our understanding of gene duplications as a mechanism of adaptation and its relevance to the long-term persistence of gene duplications.

摘要

在进化理论中,一个广泛研究的课题是如何在基因组中长期维持中性、冗余的拷贝。同时,也描述了不同物种适应各种环境条件的适应性基因复制的例子。在这一点上,还为时过早,无法确定大量的基因拷贝是否最初通过增加剂量的正选择而达到固定。然而,文献中已经积累了足够多的例子,应该考虑这种可能性。在这里,我回顾了适应性基因复制的最新例子,并试图对哪些类型的基因在某些环境条件下可能更容易被选择进行概括。在适应压力或新环境条件的物种的生态实地研究中识别拷贝数变异,可能会提高我们对基因复制作为适应机制的理解,以及它与基因复制长期持续存在的相关性。

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本文引用的文献

1
APPEARANCE AND SWEEP OF A GENE DUPLICATION: ADAPTIVE RESPONSE AND POTENTIAL FOR NEW FUNCTIONS IN THE MOSQUITO CULEX PIPIENS.基因复制的呈现与扩展:致倦库蚊的适应性反应及新功能潜力
Evolution. 1998 Dec;52(6):1705-1712. doi: 10.1111/j.1558-5646.1998.tb02250.x.
2
Antifreeze protein gene amplification facilitated niche exploitation and speciation in wolffish.抗冻蛋白基因扩增促进了狼鱼的生态位开发和物种形成。
FEBS J. 2012 Jun;279(12):2215-30. doi: 10.1111/j.1742-4658.2012.08605.x. Epub 2012 May 22.
3
Independent recruitment of a flavin-dependent monooxygenase for safe accumulation of sequestered pyrrolizidine alkaloids in grasshoppers and moths.通过独立招募黄素依赖单加氧酶,实现在昆虫体内安全积累结合型吡咯里西啶生物碱。
PLoS One. 2012;7(2):e31796. doi: 10.1371/journal.pone.0031796. Epub 2012 Feb 20.
4
Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group.参与果蝇物种组嗅觉行为的基因的进化基因组学。
Evol Bioinform Online. 2012;8:89-104. doi: 10.4137/EBO.S8484. Epub 2012 Jan 9.
5
Extensive and continuous duplication facilitates rapid evolution and diversification of gene families.广泛而持续的复制促进了基因家族的快速进化和多样化。
Mol Biol Evol. 2012 Aug;29(8):2019-29. doi: 10.1093/molbev/mss068. Epub 2012 Feb 15.
6
Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification.新型隐球菌的大规模串联基因扩增驱动的微进化。
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7
Copy number variation of individual cattle genomes using next-generation sequencing.利用下一代测序技术检测个体牛基因组的拷贝数变异。
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8
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10
Dynamic gene copy number variation in collinear regions of grass genomes.草基因组共线性区域的动态基因拷贝数变异。
Mol Biol Evol. 2012 Feb;29(2):861-71. doi: 10.1093/molbev/msr261. Epub 2011 Oct 14.