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微卫星的跨物种扩增揭示了金毛翁柱组(仙人掌科)在分子变异和分类界限上的不一致。

Cross-species amplification of microsatellites reveals incongruence in the molecular variation and taxonomic limits of the Pilosocereus aurisetus group (Cactaceae).

作者信息

Moraes Evandro M, Perez Manolo F, Téo Mariana F, Zappi Daniela C, Taylor Nigel P, Machado Marlon C

机构信息

Departamento de Biologia, Universidade Federal de São Carlos, Rodovia João Leme dos Santos km 110, Sorocaba, São Paulo 18052780, Brazil.

出版信息

Genetica. 2012 Sep;140(7-9):277-85. doi: 10.1007/s10709-012-9678-1. Epub 2012 Sep 16.

DOI:10.1007/s10709-012-9678-1
PMID:22983678
Abstract

The Pilosocereus aurisetus group contains eight cactus species restricted to xeric habitats in eastern and central Brazil that have an archipelago-like distribution. In this study, 5-11 microsatellite markers previously designed for Pilosocereus machrisii were evaluated for cross-amplification and polymorphisms in ten populations from six species of the P. aurisetus group. The genotypic information was subsequently used to investigate the genetic relationships between the individuals, populations, and species analyzed. Only the Pmac101 locus failed to amplify in all of the six analyzed species, resulting in an 88 % success rate. The number of alleles per polymorphic locus ranged from 2 to 12, and the most successfully amplified loci showed at least one population with a larger number of alleles than were reported in the source species. The population relationships revealed clear genetic clustering in a neighbor-joining tree that was partially incongruent with the taxonomic limits between the P. aurisetus and P. machrisii species, a fact which parallels the problematic taxonomy of the P. aurisetus group. A Bayesian clustering analysis of the individual genotypes confirmed the observed taxonomic incongruence. These microsatellite markers provide a valuable resource for facilitating large-scale genetic studies on population structures, systematics and evolutionary history in this group.

摘要

金毛翁柱组包含八个仙人掌物种,它们仅分布于巴西东部和中部的干旱生境中,呈群岛状分布。在本研究中,对先前为马氏金毛翁柱设计的5 - 11个微卫星标记进行了评估,以检测其在金毛翁柱组六个物种的十个种群中的交叉扩增和多态性。随后,利用这些基因型信息研究了所分析的个体、种群和物种之间的遗传关系。在所有六个被分析的物种中,只有Pmac101位点未能成功扩增,成功率为88%。每个多态性位点的等位基因数量在2到12个之间,最成功扩增的位点显示,至少有一个种群的等位基因数量比原始物种报道的更多。种群关系在邻接树中显示出明显的遗传聚类,这与金毛翁柱和马氏金毛翁柱物种之间的分类界限部分不一致,这一事实与金毛翁柱组存在问题的分类学情况相似。对个体基因型的贝叶斯聚类分析证实了观察到的分类不一致情况。这些微卫星标记为促进对该组种群结构、系统发育和进化历史的大规模遗传研究提供了宝贵资源。

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本文引用的文献

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Am J Bot. 2011 Aug;98(8):e204-6. doi: 10.3732/ajb.1100033.
2
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III.比较整个叶绿体基因组序列以选择用于被子植物系统发育研究的非编码区:龟兔赛跑 III。
Am J Bot. 2007 Mar;94(3):275-88. doi: 10.3732/ajb.94.3.275.
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Mol Biol Rep. 2020 Feb;47(2):1535-1542. doi: 10.1007/s11033-019-05064-3. Epub 2019 Sep 9.
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PLoS One. 2018 Apr 9;13(4):e0195475. doi: 10.1371/journal.pone.0195475. eCollection 2018.
描述豪沙钩柱仙人掌属( Trichocereeae,仙人掌科)中多态微卫星位点的特征。
Am J Bot. 2010 Mar;97(3):e17-9. doi: 10.3732/ajb.1000026. Epub 2010 Feb 19.
4
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