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海洋盐单胞菌属,新属,红杆菌科的一个新种,从印度维萨卡帕特南的海滨水域中分离得到。

Albirhodobacter marinus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea shore water of Visakhapatnam, India.

机构信息

Microbial Type Culture Collection and Gene Bank, Institute of Microbial Technology (CSIR), Sector 39A, Chandigarh, 160 036, India.

出版信息

Antonie Van Leeuwenhoek. 2013 Feb;103(2):347-55. doi: 10.1007/s10482-012-9814-z. Epub 2012 Sep 22.

Abstract

A novel marine, Gram-negative, rod-shaped bacterium, designated strain N9(T), was isolated from a water sample of the sea shore at Visakhapatnam, Andhra Pradesh (India). Strain N9(T) was found to be positive for oxidase and catalase activities. The fatty acids were found to be dominated by C(16:0), C(18:1) ω7c and summed in feature 3 (C(16:1) ω7c and/or C(16:1) ω6c). Strain N9(T) was determined to contain Q-10 as the major respiratory quinone and phosphatidylethanolamine, phosphatidylglycerol, two aminophospholipids, two phospholipids and four unidentified lipids as polar lipids. The DNA G+C content of the strain N9(T) was found to be 63 mol%. 16S rRNA gene sequence analysis indicated that Rhodobacter sphaeroides, Rhodobacter johrii, Pseudorhodobacter ferrugineus, Rhodobacter azotoformans, Rhodobacter ovatus and Pseudorhodobacter aquimaris were the nearest phylogenetic neighbours, with pair-wise sequence similarities of 95.43, 95.36, 94.24, 95.31, 95.60 and 94.74 %, respectively. Phylogenetic analysis showed that strain N9(T) formed a distinct branch within the family Rhodobacteraceae and clustered with the clade comprising species of the genus Pseudorhodobacter, together with species of the genera Roseicitreum, Roseinatronobacter, Roseibaca and Rhodobaca. Species of the genus Pseudorhodobacter are phylogenetically close with a 16S rRNA gene sequence dissimilarity of 5.9-7.3 % (92.7-94.1 % similarity). Based on the above-mentioned phenotypic characteristics and on phylogenetic inference, strain N9(T) is proposed as a representative of a new genus and a novel species of the family Rhodobacteraceae as Albirhodobacter marinus gen. nov., sp. nov. The type strain of Albirhodobacter marinus is N9 (= MTCC 11277(T) = JCM 17680(T)).

摘要

一株新型海洋、革兰氏阴性、杆状细菌,命名为 N9(T) 株,从印度安得拉邦维沙卡帕特南的海滨水样中分离得到。N9(T) 株被发现氧化酶和过氧化氢酶活性均为阳性。脂肪酸主要由 C(16:0)、C(18:1) ω7c 和特征 3(C(16:1) ω7c 和/或 C(16:1) ω6c)组成。N9(T) 株被确定含有 Q-10 作为主要的呼吸醌,以及磷脂酰乙醇胺、磷脂酰甘油、两种氨基磷脂、两种磷脂和四种未鉴定的脂质作为极性脂质。N9(T) 株的 DNA G+C 含量为 63mol%。16S rRNA 基因序列分析表明,它与红杆菌属的球形红杆菌、黄杆菌属的约氏黄杆菌、假红杆菌属的费氏铁红杆菌、固氮红杆菌属的固氮红杆菌、卵形红杆菌和假红杆菌属的aquimaris 为最接近的系统发育近邻,两两序列相似性分别为 95.43%、95.36%、94.24%、95.31%、95.60%和 94.74%。系统发育分析表明,N9(T) 株在红杆菌科内形成一个独特的分支,与包含假红杆菌属物种的分支聚类在一起,同时还与玫瑰色柠檬酸杆菌属、玫瑰色阿托农杆菌属、玫瑰色杆菌属和红杆菌属的物种聚类在一起。假红杆菌属的物种在系统发育上非常接近,其 16S rRNA 基因序列差异为 5.9-7.3%(92.7-94.1%相似性)。基于上述表型特征和系统发育推断,N9(T) 株被提议代表红杆菌科的一个新属和一个新种,命名为 Albirhodobacter marinus 属,nov. 种。Albirhodobacter marinus 的模式株为 N9(=MTCC 11277(T)=JCM 17680(T))。

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