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随机演化的独特型网络:结构特性与架构

Randomly evolving idiotypic networks: structural properties and architecture.

作者信息

Schmidtchen Holger, Thüne Mario, Behn Ulrich

机构信息

Institut für Theoretische Physik, Universität Leipzig, POB 100 920, D-04009 Leipzig, Germany.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jul;86(1 Pt 1):011930. doi: 10.1103/PhysRevE.86.011930. Epub 2012 Jul 31.

Abstract

We consider a minimalistic dynamic model of the idiotypic network of B lymphocytes. A network node represents a population of B lymphocytes of the same specificity (idiotype), which is encoded by a bit string. The links of the network connect nodes with complementary and nearly complementary bit strings, allowing for a few mismatches. A node is occupied if a lymphocyte clone of the corresponding idiotype exists; otherwise it is empty. There is a continuous influx of new B lymphocytes of random idiotype from the bone marrow. B lymphocytes are stimulated by cross-linking their receptors with complementary structures. If there are too many complementary structures, steric hindrance prevents cross-linking. Stimulated cells proliferate and secrete antibodies of the same idiotype as their receptors; unstimulated lymphocytes die. Depending on few parameters, the autonomous system evolves randomly towards patterns of highly organized architecture, where the nodes can be classified into groups according to their statistical properties. We observe and describe analytically the building principles of these patterns, which make it possible to calculate number and size of the node groups and the number of links between them. The architecture of all patterns observed so far in simulations can be explained this way. A tool for real-time pattern identification is proposed.

摘要

我们考虑一种B淋巴细胞独特型网络的简约动态模型。网络节点代表具有相同特异性(独特型)的B淋巴细胞群体,其由一个位串编码。网络的链接将具有互补和近乎互补位串的节点连接起来,允许存在一些错配。如果存在相应独特型的淋巴细胞克隆,则节点被占据;否则为空。有来自骨髓的随机独特型新B淋巴细胞持续流入。B淋巴细胞通过使其受体与互补结构交联而受到刺激。如果互补结构过多,空间位阻会阻止交联。受刺激的细胞增殖并分泌与其受体相同独特型的抗体;未受刺激的淋巴细胞死亡。根据少数参数,自主系统随机地朝着高度有组织架构的模式演化,其中节点可根据其统计特性分为几组。我们观察并分析描述了这些模式的构建原理,这使得能够计算节点组的数量和大小以及它们之间的链接数量。到目前为止在模拟中观察到的所有模式的架构都可以这样解释。提出了一种实时模式识别工具。

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