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模拟退火揭示了 SGLT1 的动力学活性,SGLT1 是 LeuT 结构家族的一员。

Simulated annealing reveals the kinetic activity of SGLT1, a member of the LeuT structural family.

机构信息

Groupe d'étude des protéines membranaires, Département de physique, Université de Montréal, Montréal, Québec H3C 3J7, Canada.

出版信息

J Gen Physiol. 2012 Oct;140(4):361-74. doi: 10.1085/jgp.201210822.

Abstract

The Na(+)/glucose cotransporter (SGLT1) is the archetype of membrane proteins that use the electrochemical Na(+) gradient to drive uphill transport of a substrate. The crystal structure recently obtained for vSGLT strongly suggests that SGLT1 adopts the inverted repeat fold of the LeuT structural family for which several crystal structures are now available. What is largely missing is an accurate view of the rates at which SGLT1 transits between its different conformational states. In the present study, we used simulated annealing to analyze a large set of steady-state and pre-steady-state currents measured for human SGLT1 at different membrane potentials, and in the presence of different Na(+) and α-methyl-d-glucose (αMG) concentrations. The simplest kinetic model that could accurately reproduce the time course of the measured currents (down to the 2 ms time range) is a seven-state model (C(1) to C(7)) where the binding of the two Na(+) ions (C(4)→C(5)) is highly cooperative. In the forward direction (Na(+)/glucose influx), the model is characterized by two slow, electroneutral conformational changes (59 and 100 s(-1)) which represent reorientation of the free and of the fully loaded carrier between inside-facing and outside-facing conformations. From the inward-facing (C(1)) to the outward-facing Na-bound configuration (C(5)), 1.3 negative elementary charges are moved outward. Although extracellular glucose binding (C(5)→C(6)) is electroneutral, the next step (C(6)→C(7)) carries 0.7 positive charges inside the cell. Alignment of the seven-state model with a generalized model suggested by the structural data of the LeuT fold family suggests that electrogenic steps are associated with the movement of the so-called thin gates on each side of the substrate binding site. To our knowledge, this is the first model that can quantitatively describe the behavior of SGLT1 down to the 2 ms time domain. The model is highly symmetrical and in good agreement with the structural information obtained from the LeuT structural family.

摘要

钠-葡萄糖协同转运蛋白(SGLT1)是利用电化学钠离子梯度驱动底物向上转运的膜蛋白的原型。最近获得的 vSGLT 的晶体结构强烈表明,SGLT1 采用了现已获得多个晶体结构的 LeuT 结构家族的反向重复折叠。目前尚不清楚 SGLT1 在不同构象状态之间跃迁的速率的准确视图。在本研究中,我们使用模拟退火分析了在不同膜电位下以及不同钠离子和α-甲基-D-葡萄糖(αMG)浓度下测量的人 SGLT1 的大量稳态和预稳态电流。可以准确再现测量电流时程(低至 2 ms 时间范围)的最简单的动力学模型是一个七态模型(C(1)至 C(7)),其中两个钠离子(C(4)→C(5))的结合具有高度协同性。在正向方向(Na(+)/葡萄糖内流),该模型的特征是两个缓慢的、电中性的构象变化(59 和 100 s(-1)),代表自由载体和完全加载载体在面向内和面向外构象之间的重新取向。从面向内(C(1))到面向外结合钠离子的构型(C(5)),有 1.3 个负基本电荷向外移动。尽管细胞外葡萄糖结合(C(5)→C(6))是电中性的,但下一步(C(6)→C(7))在细胞内携带 0.7 个正电荷。将七态模型与 LeuT 折叠家族结构数据提出的广义模型对齐表明,电生成步骤与位于底物结合位点两侧的所谓的薄门的运动有关。据我们所知,这是第一个可以定量描述 SGLT1 行为的模型,直到 2 ms 时间域。该模型具有高度对称性,与从 LeuT 结构家族获得的结构信息非常吻合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1770/3457693/7e59604cd81e/JGP_201210822R_Fig1.jpg

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