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旋转门和分叉器:将新陈代谢推上正轨的失衡转换引擎。

Turnstiles and bifurcators: the disequilibrium converting engines that put metabolism on the road.

作者信息

Branscomb Elbert, Russell Michael J

机构信息

Institute for Genomic Biology, UIUC, Champaign-Urbana, IL, USA.

出版信息

Biochim Biophys Acta. 2013 Feb;1827(2):62-78. doi: 10.1016/j.bbabio.2012.10.003. Epub 2012 Oct 10.

Abstract

The Submarine Hydrothermal Alkaline Spring Theory for the emergence of life holds that it is the ordered delivery of hydrogen and methane in alkaline hydrothermal solutions at a spontaneously precipitated inorganic osmotic and catalytic membrane to the carbon dioxide and other electron acceptors in the earliest acidulous cool ocean that, through these gradients, drove life into being. That such interactions between hydrothermal fuels and potential oxidants have so far not been accomplished in the lab is because some steps along the necessary metabolic pathways are endergonic and must therefore be driven by being coupled to thermodynamically larger exergonic processes. But coupling of this kind is far from automatic and it is not enough to merely sum the ΔGs of two supposedly coupled reactions and show their combined thermodynamic viability. An exergonic reaction will not drive an endergonic one unless 'forced' to do so by being tied to it mechanistically via an organized "engine" of "Free Energy Conversion" (FEC). Here we discuss the thermodynamics of FEC and advance proposals regarding the nature and roles of the FEC devices that could, in principle, have arisen spontaneously in the alkaline hydrothermal context and have forced the onset of a protometabolism. The key challenge is to divine what these initial engines of life were in physicochemical terms and as part of that, what structures provided the first "turnstile-like" mechanisms needed to couple the partner processes in free energy conversion; in particular to couple the dissipation of geochemically given gradients to, say, the reduction of CO(2) to formate and the generation of a pyrophosphate disequilibrium. This article is part of a Special Issue entitled: The evolutionary aspects of bioenergetic systems.

摘要

生命起源的海底热液碱性泉理论认为,在最早的酸性冷海洋中,在自发沉淀的无机渗透和催化膜处,碱性热液溶液中的氢和甲烷有序地输送到二氧化碳及其他电子受体,正是通过这些梯度驱动了生命的诞生。热液燃料与潜在氧化剂之间的这种相互作用至今尚未在实验室中实现,原因是必要代谢途径中的一些步骤是吸能的,因此必须通过与热力学上更大的放能过程耦合来驱动。但这种耦合远非自动发生,仅仅将两个假定耦合反应的ΔG相加并显示其组合的热力学可行性是不够的。一个放能反应不会驱动一个吸能反应,除非通过一个有组织的“自由能转换”(FEC)“引擎”与之机械地“绑定”,从而“迫使”它这样做。在这里,我们讨论FEC的热力学,并就FEC装置的性质和作用提出建议,这些装置原则上可能在碱性热液环境中自发出现,并促使原代谢的开始。关键挑战在于从物理化学角度推测这些最初的生命引擎是什么,以及作为其中一部分,哪些结构提供了自由能转换中耦合伙伴过程所需的第一个“类似旋转门”的机制;特别是将地球化学给定梯度的耗散与例如将CO₂还原为甲酸盐以及产生焦磷酸不平衡耦合起来。本文是名为:生物能量系统的进化方面的特刊的一部分。

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