Department of Biochemistry & Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Nat Chem. 2012 Nov;4(11):900-6. doi: 10.1038/nchem.1454. Epub 2012 Sep 23.
De novo proteins provide a unique opportunity to investigate the structure-function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a de novo designed di-iron carboxylate protein from the Due Ferri family. Originally created to catalyse the O(2)-dependent, two-electron oxidation of hydroquinones, the protein was reprogrammed to catalyse the selective N-hydroxylation of arylamines by remodelling the substrate access cavity and introducing a critical third His ligand to the metal-binding cavity. Additional second- and third-shell modifications were required to stabilize the His ligand in the core of the protein. These structural changes resulted in at least a 10(6)-fold increase in the relative rate between the arylamine N-hydroxylation and hydroquinone oxidation reactions. This result highlights the potential for using de novo proteins as scaffolds for future investigations of the geometric and electronic factors that influence the catalytic tuning of di-iron active sites.
从头设计的二铁羧酸盐蛋白为研究金属蛋白酶的结构-功能关系提供了独特的机会,该蛋白具有最小、明确且受控制的支架。在这里,我们描述了从头设计的 Due Ferri 家族中二铁羧酸盐蛋白功能的合理编程。该蛋白最初被设计用来催化 O(2)依赖性的、双电子氧化氢醌,通过重塑底物进入腔并向金属结合腔引入关键的第三个 His 配体,该蛋白被重新编程以催化芳胺的选择性 N-羟化。需要额外的第二和第三壳层修饰来稳定蛋白核心中的 His 配体。这些结构变化导致芳胺 N-羟化和氢醌氧化反应之间的相对速率至少增加了 10(6)倍。这一结果突出了从头设计的蛋白质作为未来研究影响二铁活性中心催化调谐的几何和电子因素的支架的潜力。