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宏基因组学:微生物基因挖掘的未来。

Metagenomics: Future of microbial gene mining.

机构信息

Department of Biotechnology, University of Jammu, Jammu, 180 006 India.

出版信息

Indian J Microbiol. 2008 Jun;48(2):202-15. doi: 10.1007/s12088-008-0033-2. Epub 2008 Jul 27.

DOI:10.1007/s12088-008-0033-2
PMID:23100714
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3450183/
Abstract

Modern biotechnology has a steadily increasing demand for novel genes for application in various industrial processes and development of genetically modified organisms. Identification, isolation and cloning for novel genes at a reasonable pace is the main driving force behind the development of unprecedented experimental approaches. Metagenomics is one such novel approach for engendering novel genes. Metagenomics of complex microbial communities (both cultivable and uncultivable) is a rich source of novel genes for biotechnological purposes. The contributions made by metagenomics to the already existing repository of prokaryotic genes is quite impressive but nevertheless, this technique is still in its infancy. In the present review we have drawn comparison between routine cloning techniques and metagenomic approach for harvesting novel microbial genes and described various methods to reach down to the specific genes in the metagenome. Accomplishments made thus far, limitations and future prospects of this resourceful technique are discussed.

摘要

现代生物技术对新型基因的需求不断增加,这些基因可应用于各种工业过程和转基因生物的开发。以合理的速度识别、分离和克隆新型基因是开发前所未有的实验方法的主要动力。宏基因组学就是这样一种产生新型基因的新方法。对复杂微生物群落(可培养和不可培养的)的宏基因组学是生物技术目的新型基因的丰富来源。宏基因组学对已经存在的原核基因库的贡献令人印象深刻,但尽管如此,这项技术仍处于起步阶段。在本综述中,我们比较了常规克隆技术和宏基因组学方法在收获新型微生物基因方面的优缺点,并描述了各种方法来深入研究宏基因组中的特定基因。讨论了迄今为止取得的成就、该技术的局限性和未来前景。

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本文引用的文献

1
Metagenomics, biotechnology with non-culturable microbes.宏基因组学,研究不可培养微生物的生物技术。
Appl Microbiol Biotechnol. 2007 Jul;75(5):955-62. doi: 10.1007/s00253-007-0945-5. Epub 2007 Mar 30.
2
Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment.采用宏基因组学方法从海洋沉积物未培养细菌中分离一种新型低温活性脂肪酶。
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Whole-metagenome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification using phi29 polymerase.使用 phi29 聚合酶通过多重置换扩增对与石珊瑚相关的微生物群落进行全基因组扩增。
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Metagenomic analysis of the human distal gut microbiome.人类远端肠道微生物群的宏基因组分析。
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5
Isolation and biochemical characterization of two novel metagenome-derived esterases.两种新的宏基因组来源酯酶的分离与生化特性分析
Appl Environ Microbiol. 2006 May;72(5):3637-45. doi: 10.1128/AEM.72.5.3637-3645.2006.
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New directions and interactions in metagenomics research.宏基因组学研究的新方向与相互作用
FEMS Microbiol Ecol. 2006 Mar;55(3):331-8. doi: 10.1111/j.1574-6941.2005.00055.x.
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Characterization of two novel lipase genes isolated directly from environmental sample.直接从环境样本中分离得到的两个新型脂肪酶基因的表征
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