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宏基因组分析:酶生物勘探的强大工具。

Metagenome Analysis: a Powerful Tool for Enzyme Bioprospecting.

作者信息

Madhavan Aravind, Sindhu Raveendran, Parameswaran Binod, Sukumaran Rajeev K, Pandey Ashok

机构信息

Microbial Processes and Technology Division, National Institute for Interdisciplinary Science and Technology, CSIR, Trivandrum, 695 019, India.

Rajiv Gandhi Centre For Biotechnology, Trivandrum, 695 014, India.

出版信息

Appl Biochem Biotechnol. 2017 Oct;183(2):636-651. doi: 10.1007/s12010-017-2568-3. Epub 2017 Aug 16.

Abstract

Microorganisms are found throughout every corner of nature, and vast number of microorganisms is difficult to cultivate by classical microbiological techniques. The advent of metagenomics has revolutionized the field of microbial biotechnology. Metagenomics allow the recovery of genetic material directly from environmental niches without any cultivation techniques. Currently, metagenomic tools are widely employed as powerful tools to isolate and identify enzymes with novel biocatalytic activities from the uncultivable component of microbial communities. The employment of next-generation sequencing techniques for metagenomics resulted in the generation of large sequence data sets derived from various environments, such as soil, the human body and ocean water. This review article describes the state-of-the-art techniques and tools in metagenomics and discusses the potential of metagenomic approaches for the bioprospecting of industrial enzymes from various environmental samples. We also describe the unusual novel enzymes discovered via metagenomic approaches and discuss the future prospects for metagenome technologies.

摘要

微生物遍布自然界的各个角落,大量的微生物难以用传统微生物技术培养。宏基因组学的出现彻底改变了微生物生物技术领域。宏基因组学允许直接从环境生态位中获取遗传物质,无需任何培养技术。目前,宏基因组学工具被广泛用作强大的工具,从微生物群落中不可培养的成分中分离和鉴定具有新型生物催化活性的酶。用于宏基因组学的下一代测序技术的应用产生了来自各种环境(如土壤、人体和海水)的大量序列数据集。这篇综述文章描述了宏基因组学的最新技术和工具,并讨论了从各种环境样品中进行工业酶生物勘探的宏基因组学方法的潜力。我们还描述了通过宏基因组学方法发现的异常新型酶,并讨论了宏基因组技术未来的前景。

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