从有限的单核苷酸多态性 (SNP) 推断宋内志贺菌的全球系统发育及利用高分辨率熔解曲线分析快速、经济地对菌株进行 SNP 分型的方法。
Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.
机构信息
Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom.
出版信息
J Clin Microbiol. 2013 Jan;51(1):303-5. doi: 10.1128/JCM.02238-12. Epub 2012 Oct 31.
Abstract
The current Shigella sonnei pandemic involves geographically associated, multidrug-resistant clones. This study has demonstrated that S. sonnei phylogeny can be accurately defined with limited single nucleotide polymorphisms (SNPs). By typing 6 informative SNPs using a high-resolution melting (HRM) assay, major S. sonnei lineages/sublineages can be identified as defined by whole-genome variation.
摘要
当前的宋内志贺菌流行涉及具有地理相关性的、多药耐药克隆。本研究表明，使用有限的单核苷酸多态性（SNPs）可以准确定义宋内志贺菌的系统发育。通过使用高分辨率熔解（HRM）分析对 6 个信息性 SNPs 进行分型，可以根据全基因组变异将主要的宋内志贺菌谱系/亚谱系鉴定为定义。
相似文献
1
Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.从有限的单核苷酸多态性 (SNP) 推断宋内志贺菌的全球系统发育及利用高分辨率熔解曲线分析快速、经济地对菌株进行 SNP 分型的方法。
J Clin Microbiol. 2013 Jan;51(1):303-5. doi: 10.1128/JCM.02238-12. Epub 2012 Oct 31.
2
Characterization of Shigella sonnei in Malaysia, an increasingly prevalent etiologic agent of local shigellosis cases.马来西亚志贺氏菌的特征分析，该菌为当地志贺氏菌病病例中日益流行的病原体。
BMC Infect Dis. 2012 May 20;12:122. doi: 10.1186/1471-2334-12-122.
3
Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting.使用多重高分辨率熔解技术对宋内志贺菌进行快速基因分型
J Clin Microbiol. 2015 Jul;53(7):2389-91. doi: 10.1128/JCM.00874-15. Epub 2015 Apr 29.
4
Use of whole genome sequencing in surveillance for antimicrobial-resistant Shigella sonnei infections acquired from domestic and international sources.利用全基因组测序技术监测来自国内外的耐药性宋内志贺菌感染。
Microb Genom. 2019 May;5(5). doi: 10.1099/mgen.0.000270. Epub 2019 May 17.
5
Analysis of clonal relationships among isolates of Shigella sonnei by different molecular typing methods.采用不同分子分型方法分析宋内志贺菌分离株之间的克隆关系。
J Clin Microbiol. 1995 Jul;33(7):1779-83. doi: 10.1128/jcm.33.7.1779-1783.1995.
6
Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015.2015年全基因组测序在英格兰和威尔士宋内志贺菌公共卫生监测中的应用
J Med Microbiol. 2016 Aug;65(8):882-884. doi: 10.1099/jmm.0.000296. Epub 2016 Jun 14.
7
Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.回顾性分析全基因组测序与前瞻性分型数据，进一步为英国一起宋内志贺菌爆发的流行病学调查提供信息。
Epidemiol Infect. 2013 Dec;141(12):2568-75. doi: 10.1017/S0950268813000137. Epub 2013 Feb 21.
8
Epidemiologic study of Shigella sonnei from sequential outbreaks and sporadic cases using different typing techniques.运用不同分型技术对宋内志贺菌连续暴发疫情和散发病例进行的流行病学研究。
Microbiol Immunol. 1998;42(4):259-64. doi: 10.1111/j.1348-0421.1998.tb02281.x.
9
Shigella sonnei biotype G carrying class 2 integrons in southern Italy: a retrospective typing study by pulsed field gel electrophoresis.意大利南部携带2类整合子的宋内志贺氏菌生物型G：脉冲场凝胶电泳回顾性分型研究
BMC Infect Dis. 2006 Jul 17;6:117. doi: 10.1186/1471-2334-6-117.
10
Global Distribution of Shigella sonnei Clones.宋内志贺菌克隆株的全球分布
Emerg Infect Dis. 2011 Oct;17(10):1910-2. doi: 10.3201/eid1710.101486.
引用本文的文献
1
Use of whole genome sequencing in surveillance for antimicrobial-resistant Shigella sonnei infections acquired from domestic and international sources.利用全基因组测序技术监测来自国内外的耐药性宋内志贺菌感染。
Microb Genom. 2019 May;5(5). doi: 10.1099/mgen.0.000270. Epub 2019 May 17.
2
Comparative Genomic and Phylogenetic Analysis of a Shiga Toxin Producing (STSS) Strain.产志贺毒素（STSS）菌株的比较基因组学和系统发育分析
Front Cell Infect Microbiol. 2017 May 30;7:229. doi: 10.3389/fcimb.2017.00229. eCollection 2017.
3
Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.用于公共卫生常规病原体监测的全基因组测序：欧洲侵袭性金黄色葡萄球菌的人群概况
mBio. 2016 May 5;7(3):e00444-16. doi: 10.1128/mBio.00444-16.
4
Genome diversity of Shigella boydii.鲍氏志贺菌的基因组多样性
Pathog Dis. 2016 Jun;74(4):ftw027. doi: 10.1093/femspd/ftw027. Epub 2016 Apr 6.
5
Salmonella, Shigella, and yersinia.沙门氏菌、志贺氏菌和耶尔森氏菌。
Clin Lab Med. 2015 Jun;35(2):225-46. doi: 10.1016/j.cll.2015.02.002. Epub 2015 Apr 2.
6
Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting.使用多重高分辨率熔解技术对宋内志贺菌进行快速基因分型
J Clin Microbiol. 2015 Jul;53(7):2389-91. doi: 10.1128/JCM.00874-15. Epub 2015 Apr 29.
7
Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever.450 年来伤寒沙门氏菌副伤寒 A 血清型在全球传播过程中的瞬时达尔文选择
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12199-204. doi: 10.1073/pnas.1411012111. Epub 2014 Aug 4.
本文引用的文献
1
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.宋内志贺菌全基因组测序和系统发育分析表明其近期在全球范围内由欧洲传播而来。
Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5.
2
High resolution melt analysis to track infections due to ribotype 027 Clostridium difficile.高分辨率熔解曲线分析追踪 027 型艰难梭菌导致的感染。
J Microbiol Methods. 2012 May;89(2):87-94. doi: 10.1016/j.mimet.2012.02.011. Epub 2012 Mar 3.
3
Global Distribution of Shigella sonnei Clones.宋内志贺菌克隆株的全球分布
Emerg Infect Dis. 2011 Oct;17(10):1910-2. doi: 10.3201/eid1710.101486.
4
Development of a multiple-run high-resolution melting assay for Salmonella spp. genotyping HRM application for Salmonella spp. subtyping.用于沙门氏菌属分型的高通量多重分辨率熔解分析方法的建立
Diagn Microbiol Infect Dis. 2011 Nov;71(3):192-200. doi: 10.1016/j.diagmicrobio.2011.06.012.
5
Single nucleotide polymorphism (SNP)-based differentiation of Shigella isolates by pyrosequencing.基于焦磷酸测序的志贺氏菌分离株单核苷酸多态性（SNP）分型。
Infect Genet Evol. 2011 Oct;11(7):1761-8. doi: 10.1016/j.meegid.2011.07.015. Epub 2011 Aug 4.
6
The utility of high-resolution melting analysis of SNP nucleated PCR amplicons--an MLST based Staphylococcus aureus typing scheme.基于 SNP 核化 PCR 扩增子的高分辨率熔解分析在金黄色葡萄球菌 MLST 分型方案中的应用。
PLoS One. 2011;6(6):e19749. doi: 10.1371/journal.pone.0019749. Epub 2011 Jun 22.
7
Utility of multilocus variable-number tandem-repeat analysis as a molecular tool for phylogenetic analysis of Shigella sonnei.多位点可变数目串联重复序列分析作为宋内志贺氏菌系统发育分析分子工具的效用
J Clin Microbiol. 2009 Apr;47(4):1149-54. doi: 10.1128/JCM.01607-08. Epub 2009 Feb 18.
8
Increased isolation and characterization of Shigella sonnei obtained from hospitalized children in Tehran, Iran.从伊朗德黑兰住院儿童中分离并鉴定出更多宋内志贺菌。
J Health Popul Nutr. 2008 Dec;26(4):426-30. doi: 10.3329/jhpn.v26i4.1884.
9
Epidemiology and evolution of genotype and antimicrobial resistance of an imported Shigella sonnei clone circulating in central Taiwan.台湾中部流行的一株输入性宋内志贺菌克隆株的基因型及抗菌药物耐药性的流行病学与进化
Diagn Microbiol Infect Dis. 2007 Aug;58(4):469-75. doi: 10.1016/j.diagmicrobio.2007.03.006. Epub 2007 May 16.
10
A multicentre study of Shigella diarrhoea in six Asian countries: disease burden, clinical manifestations, and microbiology.一项在六个亚洲国家开展的志贺氏菌腹泻多中心研究：疾病负担、临床表现及微生物学
PLoS Med. 2006 Sep;3(9):e353. doi: 10.1371/journal.pmed.0030353.
Zotero 插件