芘降解菌 Cycloclasticus sp. 菌株 P1 的全基因组序列。
Complete genome sequence of the pyrene-degrading bacterium Cycloclasticus sp. strain P1.
机构信息
Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, People's Republic of China.
出版信息
J Bacteriol. 2012 Dec;194(23):6677. doi: 10.1128/JB.01837-12.
Abstract
Cycloclasticus sp. strain P1 was isolated from deep-sea sediments of the Pacific Ocean and characterized as a unique bacterium in the degradation of pyrene, a four-ring polycyclic aromatic hydrocarbon (PAH). Here we report the complete genome of P1 and genes associated with PAH degradation.
摘要
环沙单胞菌 P1 株从太平洋深海沉积物中分离得到，该菌具有独特的芘降解性能，芘是一种四环多环芳烃（PAH）。本文报道了 P1 的全基因组序列和与多环芳烃降解相关的基因。
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本文引用的文献
1
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
2
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Environ Microbiol. 2008 Aug;10(8):1948-63. doi: 10.1111/j.1462-2920.2008.01611.x. Epub 2008 Apr 21.
3
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
Genome sequencing in microfabricated high-density picolitre reactors.
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
6
Molecular characterization and substrate preference of a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5.
Appl Environ Microbiol. 2003 Nov;69(11):6688-97. doi: 10.1128/AEM.69.11.6688-6697.2003.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
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