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从地中海沉没油轮阿莫科米尔福德港的石油沉积物中分离出的专性海洋多环芳烃降解细菌环裂菌属菌株78-ME的基因组序列。

Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp. 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea.

作者信息

Messina Enzo, Denaro Renata, Crisafi Francesca, Smedile Francesco, Cappello Simone, Genovese Maria, Genovese Lucrezia, Giuliano Laura, Russo Daniela, Ferrer Manuel, Golyshin Peter, Yakimov Michail M

机构信息

Institute for Coastal Marine Environment, CNR, 98122 Messina, Italy.

Institute of Catalysis, CSIC, 28049, Madrid, Spain.

出版信息

Mar Genomics. 2016 Feb;25:11-13. doi: 10.1016/j.margen.2015.10.006. Epub 2015 Oct 24.

Abstract

Cycloclasticus sp. 78-ME isolated from petroleum deposits of the sunken tanker “Amoco Milford Haven” (Gulf of Genoa, Ligurian Sea, Italy) could effectively degrade polycyclic aromatic hydrocarbons of up to five condensed rings. The genome of 78-ME was sequenced and analysed to gain insights into its remarkable degrading capacities. It comprises two circular replicons, the 2,613,078 bp chromosome and the plasmid of 42,347 bp, with 41.84% and 53.28% of the G + C content respectively. A total of 2585 protein-coding genes were obtained, and three large operons with more than fifteen enzymes belonging to four different classes of ring-cleavage dioxygenases were found.

摘要

从沉没油轮“阿莫科米尔福德港号”(意大利利古里亚海热那亚湾)的石油沉积物中分离出的环曲菌属菌株78-ME能够有效降解多达五个稠环的多环芳烃。对78-ME的基因组进行了测序和分析,以深入了解其卓越的降解能力。它由两个环状复制子组成,即2,613,078 bp的染色体和42,347 bp的质粒,G + C含量分别为41.84%和53.28%。共获得2585个蛋白质编码基因,并发现了三个大型操纵子,其中有十五种以上属于四类不同环裂解双加氧酶的酶。

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