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概述:什么是解旋酶?

Overview: what are helicases?

机构信息

Department of Biochemistry, University of Iowa Carver College of Medicine, Iowa City, IA, USA.

出版信息

Adv Exp Med Biol. 2013;767:1-16. doi: 10.1007/978-1-4614-5037-5_1.

DOI:10.1007/978-1-4614-5037-5_1
PMID:23161004
Abstract

First discovered in the 1970s, DNA helicases were initially described as enzymes that use chemical energy to separate (i.e., to unwind) the complementary strands of DNA. Because helicases are ubiquitous, display a range of fascinating biochemical activities, and are involved in all aspects of DNA metabolism, defects in human helicases are linked to a variety of genetic disorders, and helicase research continues to be important in understanding the molecular basis of DNA replication, recombination, and repair. The purpose of this book is to organize this information and to update the traditional view of these enzymes, because it is now evident that not all helicases possess bona fide strand separation activity and may function instead as energy-dependent switches or translocases. In this chapter, we will first discuss the biochemical and structural features of DNA-the lattice on which helicases operate-and its cellular organization. We will then provide a historical overview of helicases, starting from their discovery and classification, leading to their structures, mechanisms, and biomedical significance. Finally, we will highlight several key advances and developments in helicase research, and summarize some remaining questions and active areas of investigation. The subsequent chapters will discuss these topics and others in greater detail and are written by experts of these respective fields.

摘要

DNA 解旋酶最早于 20 世纪 70 年代被发现,最初被描述为利用化学能将 DNA 的互补链分离(即解旋)的酶。由于解旋酶无处不在,具有多种迷人的生化活性,并且参与 DNA 代谢的各个方面,因此人类解旋酶的缺陷与多种遗传疾病有关,解旋酶研究对于理解 DNA 复制、重组和修复的分子基础仍然很重要。本书的目的是组织这些信息并更新这些酶的传统观点,因为现在很明显,并非所有的解旋酶都具有真正的链分离活性,而是可能作为能量依赖性开关或转位酶发挥作用。在本章中,我们将首先讨论 DNA 的生化和结构特征——解旋酶作用的晶格及其细胞组织。然后,我们将从发现和分类开始,对解旋酶进行历史概述,直到它们的结构、机制和生物医学意义。最后,我们将重点介绍解旋酶研究的一些关键进展和发展,并总结一些遗留问题和活跃的研究领域。随后的章节将更详细地讨论这些主题和其他主题,并且由这些领域的专家撰写。

相似文献

1
Overview: what are helicases?概述:什么是解旋酶?
Adv Exp Med Biol. 2013;767:1-16. doi: 10.1007/978-1-4614-5037-5_1.
2
Helicases: an overview.解旋酶:概述
Methods Mol Biol. 2010;587:1-12. doi: 10.1007/978-1-60327-355-8_1.
3
Biochemical assays for the characterization of DNA helicases.用于DNA解旋酶特性鉴定的生化分析
Methods Mol Biol. 2006;314:397-415. doi: 10.1385/1-59259-973-7:397.
4
Unraveling DNA helicases. Motif, structure, mechanism and function.解析DNA解旋酶:基序、结构、机制与功能
Eur J Biochem. 2004 May;271(10):1849-63. doi: 10.1111/j.1432-1033.2004.04094.x.
5
Determining translocation orientations of nucleic acid helicases.确定核酸解旋酶的转位取向。
Methods. 2022 Aug;204:160-171. doi: 10.1016/j.ymeth.2021.11.001. Epub 2021 Nov 7.
6
DNA helicases of Escherichia coli.大肠杆菌的DNA解旋酶
Prog Nucleic Acid Res Mol Biol. 1991;40:289-326. doi: 10.1016/s0079-6603(08)60845-4.
7
Structure and function of RecQ DNA helicases.RecQ DNA解旋酶的结构与功能。
Crit Rev Biochem Mol Biol. 2004 Mar-Apr;39(2):79-97. doi: 10.1080/10409230490460756.
8
Enzymatic mechanism of the WRN helicase/nuclease.WRN解旋酶/核酸酶的酶促机制。
Methods Enzymol. 2006;409:52-85. doi: 10.1016/S0076-6879(05)09004-X.
9
History of DNA Helicases.DNA 解旋酶的历史。
Genes (Basel). 2020 Feb 27;11(3):255. doi: 10.3390/genes11030255.
10
Molecular analyses of DNA helicases involved in the replicational stress response.参与复制应激反应的 DNA 解旋酶的分子分析。
Methods. 2010 Jul;51(3):303-12. doi: 10.1016/j.ymeth.2010.02.021. Epub 2010 Feb 25.

引用本文的文献

1
Unravelling How Single-Stranded DNA Binding Protein Coordinates DNA Metabolism Using Single-Molecule Approaches.解析单链 DNA 结合蛋白如何使用单分子方法协调 DNA 代谢。
Int J Mol Sci. 2023 Feb 1;24(3):2806. doi: 10.3390/ijms24032806.
2
Nanopore tweezers measurements of RecQ conformational changes reveal the energy landscape of helicase motion.纳米孔镊子测量 RecQ 构象变化揭示解旋酶运动的能量景观。
Nucleic Acids Res. 2022 Oct 14;50(18):10601-10613. doi: 10.1093/nar/gkac837.
3
Insight into the biochemical mechanism of DNA helicases provided by bulk-phase and single-molecule assays.
从体相和单分子检测中对 DNA 解旋酶生化机制的深入了解。
Methods. 2022 Aug;204:348-360. doi: 10.1016/j.ymeth.2021.12.002. Epub 2021 Dec 8.
4
Switch-like control of helicase processivity by single-stranded DNA binding protein.单链 DNA 结合蛋白对解旋酶连续性的类开关控制。
Elife. 2021 Mar 19;10:e60515. doi: 10.7554/eLife.60515.
5
Assembly of a G-Quadruplex Repair Complex by the FANCJ DNA Helicase and the REV1 Polymerase.FANCJ DNA 解旋酶和 REV1 聚合酶组装 G-四链体修复复合物。
Genes (Basel). 2019 Dec 19;11(1):5. doi: 10.3390/genes11010005.
6
Free-energy simulations reveal molecular mechanism for functional switch of a DNA helicase.自由能模拟揭示 DNA 解旋酶功能开关的分子机制。
Elife. 2018 Apr 17;7:e34186. doi: 10.7554/eLife.34186.
7
The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.限制内切酶 CglI 的 H 亚基包含一个原型的 DEAD-Z1 解旋酶样马达。
Nucleic Acids Res. 2018 Mar 16;46(5):2560-2572. doi: 10.1093/nar/gky107.
8
Helicase SPRNTing through the nanopore.解旋酶快速穿过纳米孔。
Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):11809-11811. doi: 10.1073/pnas.1716866114. Epub 2017 Oct 24.
9
Residues in the RecQ C-terminal Domain of the Human Werner Syndrome Helicase Are Involved in Unwinding G-quadruplex DNA.人类沃纳综合征解旋酶RecQ C末端结构域中的残基参与解开G-四链体DNA。
J Biol Chem. 2017 Feb 24;292(8):3154-3163. doi: 10.1074/jbc.M116.767699. Epub 2017 Jan 9.
10
5' to 3' Unfolding Directionality of DNA Secondary Structures by Replication Protein A: G-QUADRUPLEXES AND DUPLEXES.复制蛋白A介导的DNA二级结构5'至3'方向的解折叠:G-四链体与双链体
J Biol Chem. 2016 Sep 30;291(40):21246-21256. doi: 10.1074/jbc.M115.709667. Epub 2016 Jul 19.