Department of Physics and Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, CA 94720, USA.
Cell. 2012 Nov 21;151(5):1017-28. doi: 10.1016/j.cell.2012.10.031.
Ring NTPases of the ASCE superfamily perform a variety of cellular functions. An important question about the operation of these molecular machines is how the ring subunits coordinate their chemical and mechanical transitions. Here, we present a comprehensive mechanochemical characterization of a homomeric ring ATPase-the bacteriophage φ29 packaging motor-a homopentamer that translocates double-stranded DNA in cycles composed of alternating dwells and bursts. We use high-resolution optical tweezers to determine the effect of nucleotide analogs on the cycle. We find that ATP hydrolysis occurs sequentially during the burst and that ADP release is interlaced with ATP binding during the dwell, revealing a high degree of coordination among ring subunits. Moreover, we show that the motor displays an unexpected division of labor: although all subunits of the homopentamer bind and hydrolyze ATP during each cycle, only four participate in translocation, whereas the remaining subunit plays an ATP-dependent regulatory role.
ASCE 超家族的环 NTP 酶执行多种细胞功能。关于这些分子机器的运作,一个重要的问题是环亚基如何协调它们的化学和机械转变。在这里,我们对同源环 ATP 酶 - 噬菌体 φ29 包装马达进行了全面的机械化学表征 - 一种由双链 DNA 组成的同源五聚体在由交替停留和爆发组成的循环中进行易位。我们使用高分辨率光镊来确定核苷酸类似物对循环的影响。我们发现 ATP 水解在爆发期间顺序发生,并且 ADP 释放与停留期间的 ATP 结合交错,显示出环亚基之间的高度协调。此外,我们表明该马达显示出意想不到的分工:尽管同五聚体的所有亚基在每个循环中都结合并水解 ATP,但只有四个参与易位,而其余的亚基则发挥 ATP 依赖性的调节作用。