文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期，新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

ArrayExpress 更新——数据库增长趋势及与数据分析工具的链接。

ArrayExpress update--trends in database growth and links to data analysis tools.

机构信息

Functional Genomics Team, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

出版信息

Nucleic Acids Res. 2013 Jan;41(Database issue):D987-90. doi: 10.1093/nar/gks1174. Epub 2012 Nov 27.

DOI:10.1093/nar/gks1174
PMID:23193272
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3531147/
Abstract

The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.

摘要

ArrayExpress 功能基因组学数据档案（http://www.ebi.ac.uk/arrayexpress）是三个国际性功能基因组学公共数据存储库之一，其他两个分别是 NCBI 的基因表达综合数据库和 DDBJ 组学档案，均支持经过同行评审的出版物。它接受基于测序或基于阵列的技术生成的数据，目前包含近 100 万个检测，来自超过 30000 个实验。基于测序的提交比例在过去 2 年中显著增长，并且在 2012 年达到了所有新数据的 15%。所有数据都可以从 ArrayExpress 以 MAGE-TAB 格式获取，这允许与数据分析和可视化工具（包括 Bioconductor 和 GenomeSpace）进行稳健链接。此外，为了显著一部分的 ArrayExpress 数据，已经为微阵列数据生成了 R 对象，以及为测序数据生成了二进制对齐格式文件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf89/3531147/602ff18356b0/gks1174f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf89/3531147/602ff18356b0/gks1174f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf89/3531147/602ff18356b0/gks1174f1p.jpg

相似文献

[1]
ArrayExpress update--trends in database growth and links to data analysis tools.

Nucleic Acids Res. 2012-11-27

[2]
ArrayExpress update--simplifying data submissions.

Nucleic Acids Res. 2015-1

[3]
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.

Nucleic Acids Res. 2011-1

[4]
ArrayExpress--a public database of microarray experiments and gene expression profiles.

Nucleic Acids Res. 2007-1

[5]
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Nucleic Acids Res. 2011-11-22

[6]
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.

Nucleic Acids Res. 2009-1

[7]
From ArrayExpress to BioStudies.

Nucleic Acids Res. 2021-1-8

[8]
ArrayExpress--a public repository for microarray gene expression data at the EBI.

Nucleic Acids Res. 2003-1-1

[9]
ArrayExpress update - from bulk to single-cell expression data.

Nucleic Acids Res. 2019-1-8

[10]
ArrayExpress: a public database of gene expression data at EBI.

C R Biol. 2003

引用本文的文献

[1]
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners.

RNA Biol. 2025-12

[2]
Eomesodermin in conjunction with the BAF complex promotes expansion and invasion of the trophectoderm lineage.

Nat Commun. 2025-5-31

[3]
A comprehensive in silico genome-wide identification and characterization of SQUAMOSA promoter binding protein (SBP) gene family in Musa acuminata.

J Genet Eng Biotechnol. 2025-3

[4]
Identification of Hub Genes Involved in Early-onset Schizophrenia: From Genetic Susceptibility to Predicted Regulated Gene Expression.

Res Sq. 2025-1-20

[5]
CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome.

Brief Bioinform. 2024-7-23

[6]
Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges.

Nucleic Acids Res. 2024-5-22

[7]
Novel loss of function mutation in gene compromises tubulin stability and proteostasis causing spastic paraplegia and ataxia.

Front Cell Neurosci. 2023-6-23

[8]
Deciphering the Tubulin Language: Molecular Determinants and Readout Mechanisms of the Tubulin Code in Neurons.

Int J Mol Sci. 2023-2-1

[9]
Spatial transcriptome analysis of long non-coding RNAs reveals tissue specificity and functional roles in cancer.

J Zhejiang Univ Sci B. 2023-1-15

[10]
New Insights into the Identity of the DFNA58 Gene.

Genes (Basel). 2022-12-2

本文引用的文献

[1]
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Nucleic Acids Res. 2011-11-22

[2]
The BioSample Database (BioSD) at the European Bioinformatics Institute.

Nucleic Acids Res. 2011-11-16

[3]
Ensembl 2012.

Nucleic Acids Res. 2011-11-15

[4]
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.

Nucleic Acids Res. 2011-11-7

[5]
A pipeline for RNA-seq data processing and quality assessment.

Bioinformatics. 2011-1-13

[6]
NCBI GEO: archive for functional genomics data sets--10 years on.

Nucleic Acids Res. 2011-1

[7]
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.

Nucleic Acids Res. 2011-1

[8]
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Genome Biol. 2010-8-25

[9]
Annotare--a tool for annotating high-throughput biomedical investigations and resulting data.

Bioinformatics. 2010-8-23

[10]
Modeling sample variables with an Experimental Factor Ontology.

Bioinformatics. 2010-3-3

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索