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铜鱼(Coreius heterodon)和长吻铜鱼(Coreius guichenoti)线粒体全基因组的比较研究

Comparative study of the complete mitochondrial genomes of the bronze gudgeon (Coreius heterodon) and largemouth bronze gudgeon (Coreius guichenoti).

作者信息

Xu Dandan, Li Ping, Zhang Yaoguang, Peng Zuogang

机构信息

The Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, Southwest University School of Life Science, Beibei, Chongqing 400715, China.

出版信息

Mitochondrial DNA. 2013 Jun;24(3):189-90. doi: 10.3109/19401736.2012.744979. Epub 2012 Nov 29.

Abstract

The bronze gudgeon (Coreius heterodon) and the congeneric species largemouth bronze gudgeon (Coreius guichenoti), two endemic fish species in China, are important economic fishes in local areas. The bronze gudgeon is distributed in Yangtze River and Huanghe River basin, whereas the largemouth bronze gudgeon is distributed only in the middle and upper reaches of Yangtze River. Here, we sequenced the complete mitochondrial genomes of the two species and compared the evolutionary rate differences between the two species. The complete mitochondrial genomes of C. heterodon and C. guichenoti are 16,611 and 16,612 bp, respectively. Both of the complete mitogenome sequences contain 13 protein-coding genes, 2 rRNA subunits, 22 tRNAs and 1 non-coding control region, which are typical vertebrate mitogenomes. The relative rate test shows that the mitochondrial genome of C. heterodon evolves nearly threefold faster than that of C. guichenoti, which is mostly caused by the higher substitution rates in rRNAs and especially in tRNAs in C. heterodon.

摘要

铜鱼(Coreius heterodon)和同属的圆口铜鱼(Coreius guichenoti)是中国特有的两种鱼类,也是当地重要的经济鱼类。铜鱼分布于长江和黄河流域,而圆口铜鱼仅分布于长江中上游。在此,我们对这两个物种的线粒体全基因组进行了测序,并比较了它们之间的进化速率差异。铜鱼和圆口铜鱼的线粒体全基因组分别为16,611 bp和16,612 bp。两个完整的有丝分裂基因组序列均包含13个蛋白质编码基因、2个rRNA亚基、22个tRNA和1个非编码控制区,这是典型的脊椎动物有丝分裂基因组。相对速率测试表明,铜鱼的线粒体基因组进化速度比圆口铜鱼快近三倍,这主要是由于铜鱼的rRNA尤其是tRNA中的替换率较高。

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