Departmento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales Consejo Superior de Investigaciones Científicas, Madrid, Spain.
PLoS One. 2012;7(11):e50215. doi: 10.1371/journal.pone.0050215. Epub 2012 Nov 28.
The cosmopolitan solitary deep-water scleractinian coral Desmophyllum dianthus (Esper, 1794) was selected as a representative model species of the polyphyletic Caryophylliidae family to (1) examine phylogenetic relationships with respect to the principal Scleractinia taxa, (2) check population structure, (3) test the widespread connectivity hypothesis and (4) assess the utility of different nuclear and mitochondrial markers currently in use. To carry out these goals, DNA sequence data from nuclear (ITS and 28S) and mitochondrial (16S and COI) markers were analyzed for several coral species and for Mediterranean populations of D. dianthus. Three phylogenetic methodologies (ML, MP and BI), based on data from the four molecular markers, all supported D. dianthus as clearly belonging to the "robust" clade, in which the species Lophelia pertusa and D. dianthus not only grouped together, but also shared haplotypes for some DNA markers. Molecular results also showed shared haplotypes among D. dianthus populations distributed in regions separated by several thousands of kilometers and by clear geographic barriers. These results could reflect limited molecular and morphological taxonomic resolution rather than real widespread connectivity. Additional studies are needed in order to find molecular markers and morphological features able to disentangle the complex phylogenetic relationship in the Order Scleractinia and to differentiate isolated populations, thus avoiding the homoplasy found in some morphological characters that are still considered in the literature.
选择多射珊瑚科中具有代表性的单体深海石珊瑚四射珊瑚(Desmophyllum dianthus)(Esper,1794)作为模式物种,旨在:(1) 研究与主要的珊瑚纲分类单元的系统发育关系;(2) 检查种群结构;(3) 检验广泛连接假说;(4) 评估当前使用的不同核和线粒体标记的有效性。为了实现这些目标,对来自几种珊瑚物种和地中海地区 D. dianthus 种群的核(ITS 和 28S)和线粒体(16S 和 COI)标记的 DNA 序列数据进行了分析。基于来自四个分子标记的数据,三种系统发育方法(ML、MP 和 BI)均支持 D. dianthus 明显属于“坚固”分支,其中角蜂巢珊瑚(Lophelia pertusa)和 D. dianthus 不仅聚集在一起,而且还共享一些 DNA 标记的单倍型。分子结果还表明,分布在相隔数千公里且有明显地理屏障的区域的 D. dianthus 种群之间存在共享单倍型。这些结果可能反映了有限的分子和形态分类学分辨率,而不是真正的广泛连接。需要进一步的研究来找到能够解决石珊瑚目中复杂的系统发育关系并区分孤立种群的分子标记和形态特征,从而避免在某些仍被文献认为是形态特征的同源性。