Kumar Manish, Bhadoria D P, Dutta Koushik, Kumar F Mitesh, Singh Bharat, Singh Seema, Chhillar Anil K, Behera D, Sharma G L
CSIR-Institute of Genomics and Integrative Biology, University Campus, Mall Road, Delhi 110007, India ; Centre for Biotechnology, Maharshi Dayanand University, Rohtak, Haryana 124001, India.
Comp Funct Genomics. 2012;2012:968267. doi: 10.1155/2012/968267. Epub 2012 Nov 21.
Asthma has been an inflammatory disorder accompanied by tissue remodeling and protease-antiprotease imbalance in lungs. The SNPs of alpha-1 antitrypsin (α(1)AT) and tissue inhibitor of metalloproteinase-1 (TIMP-1) genes were studied for their association with asthma. Genotyping of α(1)AT and TIMP-1 genes was performed in 202 asthmatics and 204 controls. Serum levels of α(1)AT, TIMP-1 and cytokines were estimated to find if the interplay between genotypes and cellular biomarkers determines the pathogenesis of asthma. The analysis of results showed significantly low level of α(1)AT in the serum of asthmatics as compared to controls (P = 0.001), whereas cytokines were elevated in patients. No significant difference was observed in the concentration of TIMP-1 in patients and controls. Genotyping led to the identification of 3 SNPs (Val213Ala, Glu363Lys, and Glu376Asp) in α(1)AT gene. The novel SNP Glu363Lys of α(1)AT was found to be associated with asthma (P = 0.001). The analysis of TIMP-1 gene showed the occurrence of seven SNPs, including a novel intronic SNP at base G3774A. The allele frequency of G3774A and Phe124Phe was significantly higher in asthmatics as compared to controls. Thus, the SNP Glu363Lys of α(1)AT and G3774A and Phe124Phe of TIMP-1 could be important genetic markers for use in better management of the disease.
哮喘是一种伴有肺部组织重塑和蛋白酶 - 抗蛋白酶失衡的炎症性疾病。研究了α-1抗胰蛋白酶(α(1)AT)和金属蛋白酶组织抑制剂-1(TIMP-1)基因的单核苷酸多态性(SNP)与哮喘的关联。对202例哮喘患者和204例对照进行了α(1)AT和TIMP-1基因的基因分型。估计血清中α(1)AT、TIMP-1和细胞因子的水平,以确定基因型与细胞生物标志物之间的相互作用是否决定哮喘的发病机制。结果分析显示,与对照组相比,哮喘患者血清中α(1)AT水平显著降低(P = 0.001),而患者体内细胞因子升高。患者和对照组中TIMP-1的浓度未观察到显著差异。基因分型导致在α(1)AT基因中鉴定出3个SNP(Val213Ala、Glu363Lys和Glu376Asp)。发现α(1)AT的新型SNP Glu363Lys与哮喘相关(P = 0.001)。TIMP-1基因分析显示出现了7个SNP,包括一个位于碱基G3774A处的新型内含子SNP。与对照组相比,哮喘患者中G3774A和Phe124Phe的等位基因频率显著更高。因此,α(1)AT的SNP Glu363Lys以及TIMP-1的G3774A和Phe124Phe可能是用于更好地管理该疾病的重要遗传标记。