Departamento de Química, ICE, Universidade Federal de Juiz de Fora, Campus Universitário, Juiz de Fora, MG, Brazil.
J Mol Model. 2013 May;19(5):2149-63. doi: 10.1007/s00894-012-1689-4. Epub 2012 Dec 11.
In the present work, conformational analysis of lignin models was accomplished by considering four cross-link types (3-5', β-5', α-O-4 and β-O-4) and three monomer units [guaiacyl (G), p-hydroxyphenyl (H) and syringyl (S)]. Analysis involving the 3-5' and β-5' dimers was conducted following the standard procedure, i.e., rotating the monomers around the single bond. On the other hand, analysis of α-O-4 and β-O-4 dimers followed a distinct protocol with the aid of an interesting chemometric tool called Box-Behnken (BB) design. This methodology was applied with the aim of screening the most relevant dihedral angles. The results show that the conformational space for large systems with several dihedral angles can be mapped satisfactorily through the BB approach, reducing the number of dimensions to be treated at the quantum mechanical level. Furthermore, the quantum mechanics-chemometry-quantum mechanics (QM/BB/QM) method proposed here allows us to determine calculated torsional angles for lignin models in good agreement with crystallographic data for some model compounds.
在本工作中,通过考虑四种交联类型(3-5',β-5',α-O-4 和β-O-4)和三个单体单元[愈创木基(G),对羟基苯基(H)和丁香基(S)]完成了木质素模型的构象分析。对 3-5'和β-5'二聚体的分析是按照标准程序进行的,即围绕单键旋转单体。另一方面,α-O-4 和β-O-4 二聚体的分析遵循一个独特的协议,借助一种名为 Box-Behnken(BB)设计的有趣化学计量工具。该方法的应用旨在筛选最相关的二面角。结果表明,通过 BB 方法可以很好地映射具有多个二面角的大系统的构象空间,从而减少在量子力学水平上处理的维度数。此外,这里提出的量子力学-化学计量学-量子力学(QM/BB/QM)方法使我们能够确定木质素模型的计算扭转角与一些模型化合物的晶体学数据非常吻合。