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模型原细胞的静态再生理论条件。

Theoretical conditions for the stationary reproduction of model protocells.

机构信息

Chemistry Department, University of Bari, Italy.

出版信息

Integr Biol (Camb). 2013 Feb;5(2):324-41. doi: 10.1039/c2ib20222k.

DOI:10.1039/c2ib20222k
PMID:23233152
Abstract

In previous works we have explored the dynamics of chemically reacting proto-cellular systems, under different experimental conditions and kinetic parameters, by means of our stochastic simulation platform 'ENVIRONMENT'. In this paper we, somehow, turn the question around: accepting some broad modeling assumptions, we investigate the conditions under which simple protocells will spontaneously settle into a stationary reproducing regime, characterized by a regular growth/division cycle and the maintenance of a certain standard size and chemical composition across generations. In the first part, starting from purely geometric considerations, the condition for stationary reproduction of a protocell will be expressed in terms of a growth control coefficient (γ). Then, an explicit relationship, the osmotic synchronization condition, will be analytically derived under a set of kinetic simplifications and taking into account the osmotic pressure balance operating across the protocell membrane. In the second part of the paper, this general condition that constrains different molecular/kinetic parameters and features of the system (reaction rates, permeability coefficients, metabolite concentrations, system volume) will be applied to different cases of self-producing vesicles, predicting the stationary protocell size or lifetime. Finally, in order to test the validity of our analytic results and predictions, the case study is contrasted with data obtained through both stochastic and deterministic computational algorithms.

摘要

在以前的工作中,我们已经通过我们的随机模拟平台“ENVIRONMENT”探索了在不同实验条件和动力学参数下化学反应原细胞系统的动力学。在本文中,我们以某种方式将问题颠倒过来:接受一些广泛的建模假设,我们研究了简单原细胞在何种条件下会自发地进入一个稳定的复制状态,其特征是具有规则的生长/分裂周期,并在代际之间保持一定的标准大小和化学成分。在第一部分,从纯粹的几何考虑出发,将用生长控制系数 (γ) 来表示原细胞稳定繁殖的条件。然后,在一组动力学简化的情况下并考虑跨原细胞膜的渗透压平衡作用,将推导出一个明确的关系,即渗透同步条件。在本文的第二部分,将把这个约束系统不同分子/动力学参数和特征(反应速率、渗透率系数、代谢物浓度、系统体积)的一般条件应用于自生产泡囊的不同情况,预测稳定的原细胞大小或寿命。最后,为了验证我们的分析结果和预测的有效性,将通过随机和确定性计算算法获得的数据进行了案例研究。

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