Laboratory of Structural Biochemistry, Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA.
J Biol Chem. 2013 Feb 15;288(7):4744-54. doi: 10.1074/jbc.M112.408039. Epub 2012 Dec 14.
How cells choose between developmental pathways remains a fundamental biological question. In the case of the p53 protein family, its three transcription factors (p73, p63, and p53) each trigger a gene expression pattern that leads to specific cellular pathways. At the same time, these transcription factors recognize the same response element (RE) consensus sequences, and their transactivation of target genes overlaps. We aimed to understand target gene selectivity at the molecular level by determining the crystal structures of the p73 DNA-binding domain (DBD) in complex with full-site REs that vary in sequence. We report two structures of the p73 DBD bound as a tetramer to 20-bp full-site REs based on two distinct quarter-sites: GAACA and GAACC. Our study confirms that the DNA-binding residues are conserved within the p53 family, whereas the dimerization and tetramerization interfaces diverge. Moreover, a conserved lysine residue in loop L1 of the DBD senses the presence of guanines in positions 2 and 3 of the quarter-site RE, whereas a conserved arginine in loop 3 adapts to changes in position 5. Sequence variations in the RE elicit a p73 conformational response that might explain target gene specificity.
细胞如何在发育途径之间做出选择仍然是一个基本的生物学问题。在 p53 蛋白家族的情况下,其三个转录因子(p73、p63 和 p53)各自触发导致特定细胞途径的基因表达模式。同时,这些转录因子识别相同的反应元件(RE)共识序列,并且它们对靶基因的转录激活重叠。我们旨在通过确定与序列变化的全长 RE 结合的 p73 DNA 结合域(DBD)的晶体结构,从分子水平上理解靶基因选择性。我们报告了 p73 DBD 作为四聚体与基于两个不同四分之一位点的 20 个碱基对全长 RE 结合的两种结构:GAACA 和 GAACC。我们的研究证实 DNA 结合残基在 p53 家族内是保守的,而二聚体和四聚体化界面则不同。此外,DBD 环 L1 中的保守赖氨酸残基感知四分之一位点 RE 中位置 2 和 3 的鸟嘌呤的存在,而环 3 中的保守精氨酸适应位置 5 的变化。RE 中的序列变异引发 p73 构象反应,这可能解释靶基因特异性。
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