文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

p53 肿瘤抑制因子家族成员 p73 的 DNA 结合域四聚体与不同全长反应元件结合的晶体结构。

Crystal structures of the DNA-binding domain tetramer of the p53 tumor suppressor family member p73 bound to different full-site response elements.

机构信息

Laboratory of Structural Biochemistry, Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA.

出版信息

J Biol Chem. 2013 Feb 15;288(7):4744-54. doi: 10.1074/jbc.M112.408039. Epub 2012 Dec 14.


DOI:10.1074/jbc.M112.408039
PMID:23243311
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3576079/
Abstract

How cells choose between developmental pathways remains a fundamental biological question. In the case of the p53 protein family, its three transcription factors (p73, p63, and p53) each trigger a gene expression pattern that leads to specific cellular pathways. At the same time, these transcription factors recognize the same response element (RE) consensus sequences, and their transactivation of target genes overlaps. We aimed to understand target gene selectivity at the molecular level by determining the crystal structures of the p73 DNA-binding domain (DBD) in complex with full-site REs that vary in sequence. We report two structures of the p73 DBD bound as a tetramer to 20-bp full-site REs based on two distinct quarter-sites: GAACA and GAACC. Our study confirms that the DNA-binding residues are conserved within the p53 family, whereas the dimerization and tetramerization interfaces diverge. Moreover, a conserved lysine residue in loop L1 of the DBD senses the presence of guanines in positions 2 and 3 of the quarter-site RE, whereas a conserved arginine in loop 3 adapts to changes in position 5. Sequence variations in the RE elicit a p73 conformational response that might explain target gene specificity.

摘要

细胞如何在发育途径之间做出选择仍然是一个基本的生物学问题。在 p53 蛋白家族的情况下,其三个转录因子(p73、p63 和 p53)各自触发导致特定细胞途径的基因表达模式。同时,这些转录因子识别相同的反应元件(RE)共识序列,并且它们对靶基因的转录激活重叠。我们旨在通过确定与序列变化的全长 RE 结合的 p73 DNA 结合域(DBD)的晶体结构,从分子水平上理解靶基因选择性。我们报告了 p73 DBD 作为四聚体与基于两个不同四分之一位点的 20 个碱基对全长 RE 结合的两种结构:GAACA 和 GAACC。我们的研究证实 DNA 结合残基在 p53 家族内是保守的,而二聚体和四聚体化界面则不同。此外,DBD 环 L1 中的保守赖氨酸残基感知四分之一位点 RE 中位置 2 和 3 的鸟嘌呤的存在,而环 3 中的保守精氨酸适应位置 5 的变化。RE 中的序列变异引发 p73 构象反应,这可能解释靶基因特异性。

相似文献

[1]
Crystal structures of the DNA-binding domain tetramer of the p53 tumor suppressor family member p73 bound to different full-site response elements.

J Biol Chem. 2012-12-14

[2]
Structure of p73 DNA-binding domain tetramer modulates p73 transactivation.

Proc Natl Acad Sci U S A. 2012-4-2

[3]
Structural evolution of p53, p63, and p73: implication for heterotetramer formation.

Proc Natl Acad Sci U S A. 2009-10-20

[4]
The p73 DNA binding domain displays enhanced stability relative to its homologue, the tumor suppressor p53, and exhibits cooperative DNA binding.

Biochemistry. 2008-3-11

[5]
Transactivation specificity is conserved among p53 family proteins and depends on a response element sequence code.

Nucleic Acids Res. 2013-7-26

[6]
Deciphering the mechanism of p73 recognition of p53 response elements using the crystal structure of p73-DNA complexes and computational studies.

Int J Biol Macromol. 2022-5-1

[7]
Structural basis for ASPP2 recognition by the tumor suppressor p73.

J Mol Biol. 2012-8-20

[8]
Impact of cadmium, cobalt and nickel on sequence-specific DNA binding of p63 and p73 in vitro and in cells.

Biochem Biophys Res Commun. 2015-1-2

[9]
Molecular basis of S100 proteins interacting with the p53 homologs p63 and p73.

Oncogene. 2010-2-8

[10]
Redox state of p63 and p73 core domains regulates sequence-specific DNA binding.

Biochem Biophys Res Commun. 2013-3-15

引用本文的文献

[1]
Advances in cyclotide research: bioactivity to cyclotide-based therapeutics.

Mol Divers. 2025-1-25

[2]
UV-C Exposure Enhanced the Cd Adsorption Capability of the Radiation-Resistant Strain sp. M1-B02.

Microorganisms. 2024-12-18

[3]
Structural assessment of the full-length wild-type tumor suppressor protein p53 by mass spectrometry-guided computational modeling.

Sci Rep. 2023-5-25

[4]
Structural diversity of p63 and p73 isoforms.

Cell Death Differ. 2022-5

[5]
MCL1 binds and negatively regulates the transcriptional function of tumor suppressor p73.

Cell Death Dis. 2020-11-3

[6]
The Undervalued Avenue to Reinstate Tumor Suppressor Functionality of the p53 Protein Family for Improved Cancer Therapy-Drug Repurposing.

Cancers (Basel). 2020-9-22

[7]
Defining TP53 pioneering capabilities with competitive nucleosome binding assays.

Genome Res. 2018-11-8

[8]
Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models.

J Biol Chem. 2016-5-6

[9]
Integrated transcriptional profiling and genomic analyses reveal RPN2 and HMGB1 as promising biomarkers in colorectal cancer.

Cell Biosci. 2015-9-17

[10]
Evolution of p53 transactivation specificity through the lens of a yeast-based functional assay.

PLoS One. 2015-2-10

本文引用的文献

[1]
Processing of X-ray diffraction data collected in oscillation mode.

Methods Enzymol. 1997

[2]
Structure of p73 DNA-binding domain tetramer modulates p73 transactivation.

Proc Natl Acad Sci U S A. 2012-4-2

[3]
Pliable DNA conformation of response elements bound to transcription factor p63.

J Biol Chem. 2012-1-12

[4]
Crystal structure of a multidomain human p53 tetramer bound to the natural CDKN1A (p21) p53-response element.

Mol Cancer Res. 2011-9-20

[5]
Acetylation of lysine 120 of p53 endows DNA-binding specificity at effective physiological salt concentration.

Proc Natl Acad Sci U S A. 2011-4-27

[6]
An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity.

EMBO J. 2011-4-26

[7]
Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements.

Proc Natl Acad Sci U S A. 2011-4-4

[8]
Overview of the CCP4 suite and current developments.

Acta Crystallogr D Biol Crystallogr. 2011-4

[9]
The origins and evolution of the p53 family of genes.

Cold Spring Harb Perspect Biol. 2009-12-16

[10]
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs.

Nat Struct Mol Biol. 2010-4-4

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索