Centre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology, Nonakuri, Purba Medinipur, West Bengal-721172, India.
Integr Biol (Camb). 2013 Mar;5(3):495-509. doi: 10.1039/c2ib20206a.
Although attempts have been made to unveil protein-protein and host-pathogen interactions based on molecular insights of important biological events and pathogenesis in various organisms, these efforts have not yet been reported in Corynebacterium pseudotuberculosis (Cp), the causative agent of Caseous Lymphadenitis (CLA). In this study, we used computational approaches to develop common conserved intra-species protein-protein interaction (PPI) networks first time for four Cp strains (Cp FRC41, Cp 316, Cp 3/99-5, and Cp P54B96) followed by development of a common conserved inter-species bacterial PPI using conserved proteins in multiple pathogens (Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and all four Cp strains) and E. Coli based experimentally validated PPI data. Furthermore, the interacting proteins in the common conserved inter-species bacterial PPI were used to generate a conserved host-pathogen interaction (HP-PPI) network considering human, goat, sheep, bovine, and horse as hosts. The HP-PPI network was validated, and acetate kinase (Ack) was identified as a novel broad spectrum target. Ceftiofur, penicillin, and two natural compounds derived from Piper betel were predicted to inhibit Ack activity. One of these Piper betel compounds found to inhibit E. coli O157:H7 growth similar to penicillin. The target specificity of these betel compounds, their effects on other studied pathogens, and other in silico results are currently being validated and the results are promising.
尽管已经尝试基于各种生物体中重要生物学事件和发病机制的分子见解来揭示蛋白质-蛋白质和宿主-病原体相互作用,但这些努力尚未在引起干酪样淋巴结炎(CLA)的棒状杆菌(Cp)中报道。在这项研究中,我们首次使用计算方法为四个 Cp 菌株(Cp FRC41、Cp 316、Cp 3/99-5 和 Cp P54B96)开发了常见的保守种内蛋白质-蛋白质相互作用(PPI)网络,然后使用多种病原体(鼠疫耶尔森菌、结核分枝杆菌、白喉棒状杆菌、溃疡棒状杆菌、大肠杆菌和所有四个 Cp 菌株)和大肠杆菌中保守蛋白开发了常见的保守种间细菌 PPI 。基于实验验证的 PPI 数据。此外,在常见的保守种间细菌 PPI 中的相互作用蛋白被用于生成考虑人类、山羊、绵羊、牛和马作为宿主的保守宿主-病原体相互作用(HP-PPI)网络。验证了 HP-PPI 网络,并鉴定出乙酸激酶(Ack)为新型广谱靶标。头孢噻呋、青霉素和两种源自胡椒的天然化合物被预测可抑制 Ack 活性。发现这些胡椒化合物之一可抑制大肠杆菌 O157:H7 的生长,类似于青霉素。这些胡椒化合物的靶标特异性、它们对其他研究病原体的影响以及其他计算机模拟结果目前正在验证中,结果令人鼓舞。