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溴代甲醇和碘代甲醇二聚体中卤素键、二卤素键和氢键的竞争。

Competition between halogen, dihalogen and hydrogen bonds in bromo- and iodomethanol dimers.

机构信息

Department of Chemistry, Xavier University of Louisiana, New Orleans, LA 17025, USA.

出版信息

J Mol Model. 2013 Jul;19(7):2879-83. doi: 10.1007/s00894-012-1727-2. Epub 2013 Jan 8.

DOI:10.1007/s00894-012-1727-2
PMID:23296565
Abstract

O-H...X and O-H...O H-bonds as well as C-X...X dihalogen and C-X...O halogen bonds have been investigated in halomethanol dimers (bromomethanol dimer, iodomethanol dimer, difluorobromomethanol…bromomethanol complex and difluoroiodomethanol…iodomethanol complex). Structures of all complexes were optimized at the counterpoise-corrected MP2/cc-pVTZ level and single-point energies were calculated at the CCSD(T)/aug-cc-pVTZ level. Energy decomposition for the bromomethanol dimer complex was performed using the DFT-SAPT method based on the aug-cc-pVTZ basis set. OH...O and OH...X H-bonds are systematically the strongest in all complexes investigated, with the former being the strongest bond. Halogen and dihalogen bonds, being of comparable strength, are weaker than both H-bonds but are still significant. The strongest bonds were found in the difluoroiodomethanol…iodomethanol complex, where the O-H...O H-bond exceeds 7 kcal mol(-1), and the halogen and dihalogen bonds exceed 2.5 and 2.3 kcal mol(-1), respectively. Electrostatic energy is dominant for H-bonded structures, in halogen bonded structures electrostatic and dispersion energies are comparable, and, finally, for dihalogen structures the dispersion energy is clearly dominant.

摘要

O-H…X 和 O-H…O 氢键以及 C-X…X 二卤键和 C-X…O 卤键已在卤代甲醇二聚体(溴代甲醇二聚体、碘代甲醇二聚体、二氟溴代甲醇…溴代甲醇复合物和二氟碘代甲醇…碘代甲醇复合物)中进行了研究。所有复合物的结构均在平衡校正 MP2/cc-pVTZ 水平上进行了优化,并在 CCSD(T)/aug-cc-pVTZ 水平上计算了单点能。使用基于 aug-cc-pVTZ 基组的 DFT-SAPT 方法对溴代甲醇二聚体复合物进行了能量分解。在所有研究的复合物中,OH…O 和 OH…X 氢键系统地是最强的,前者是最强的键。卤键和二卤键具有相当的强度,比氢键弱,但仍然很重要。在最强的键中发现了二氟碘代甲醇…碘代甲醇复合物,其中 O-H…O 氢键超过 7 kcal mol(-1),卤键和二卤键分别超过 2.5 和 2.3 kcal mol(-1)。静电能对氢键结构占主导地位,在卤键结构中静电能和色散能相当,最后,在二卤键结构中色散能明显占主导地位。

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本文引用的文献

1
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J Chem Theory Comput. 2009 Jan 13;5(1):155-63. doi: 10.1021/ct8004134. Epub 2008 Dec 18.
2
Extrapolation and Scaling of the DFT-SAPT Interaction Energies toward the Basis Set Limit.DFT-SAPT 相互作用能的外推和缩放至基组极限。
J Chem Theory Comput. 2011 Mar 8;7(3):685-9. doi: 10.1021/ct200005p. Epub 2011 Feb 10.
3
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures.
Comparative Strengths of Tetrel, Pnicogen, Chalcogen, and Halogen Bonds and Contributing Factors.
四键键合、类金属键合、硫属键合和卤键的比较优势及影响因素。
Molecules. 2018 Jul 10;23(7):1681. doi: 10.3390/molecules23071681.
4
The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H 3SiH···XOH (X = F, Cl, and Br).在H3SiH···HOX和H3SiH···XOH(X = F、Cl和Br)弱键合体系中支配双氢键和卤键的电子机制。
J Mol Model. 2015 Apr;21(4):77. doi: 10.1007/s00894-015-2616-2. Epub 2015 Mar 10.
5
A Protein Data Bank survey reveals shortening of intermolecular hydrogen bonds in ligand-protein complexes when a halogenated ligand is an H-bond donor.蛋白质数据库调查显示,当卤化配体作为氢键供体时,配体 - 蛋白质复合物中的分子间氢键会缩短。
PLoS One. 2014 Jun 16;9(6):e99984. doi: 10.1371/journal.pone.0099984. eCollection 2014.
S66:与生物分子结构相关的基准相互作用能的平衡数据库。
J Chem Theory Comput. 2011 Aug 9;7(8):2427-2438. doi: 10.1021/ct2002946. Epub 2011 Jul 1.
4
Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories.基于波函数和密度泛函理论的扩展分子体系中非共价相互作用的稳定性和结构计算
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5
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6
Sigma-hole bonding between like atoms; a fallacy of atomic charges.同类原子之间的西格玛孔键合;原子电荷的谬误。
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7
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8
An overview of halogen bonding.卤素键概述。
J Mol Model. 2007 Feb;13(2):305-11. doi: 10.1007/s00894-006-0154-7. Epub 2006 Sep 30.
9
On geometries of stacked and H-bonded nucleic acid base pairs determined at various DFT, MP2, and CCSD(T) levels up to the CCSD(T)/complete basis set limit level.关于在各种密度泛函理论(DFT)、二阶微扰理论(MP2)和耦合簇单双激发理论(CCSD(T))水平下直至CCSD(T)/完全基组极限水平所确定的堆积和氢键结合的核酸碱基对的几何结构。
J Chem Phys. 2005 May 22;122(20):204322. doi: 10.1063/1.1906205.
10
Halogen bonds in biological molecules.生物分子中的卤键。
Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16789-94. doi: 10.1073/pnas.0407607101. Epub 2004 Nov 19.