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来自硫还原地杆菌的三血红素细胞色素PpcA突变体的溶液结构揭示了保守芳香族残基F15的作用。

Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15.

作者信息

Dantas Joana M, Morgado Leonor, Pokkuluri P Raj, Turner David L, Salgueiro Carlos A

机构信息

Requimte-CQFB, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus Caparica, 2829-516 Caparica, Portugal.

出版信息

Biochim Biophys Acta. 2013 Apr;1827(4):484-92. doi: 10.1016/j.bbabio.2012.12.008. Epub 2013 Jan 8.

Abstract

Extracellular electron transfer is one of the physiological hallmarks of Geobacteraceae. Most of the Geobacter species encode for more than 100 c-type cytochromes which are, in general, poorly conserved between individual species. An exception to this is the PpcA family of periplasmic triheme c-type cytochromes, which are the most abundant proteins in these bacteria. The functional characterization of PpcA showed that it has the necessary properties to couple electron/proton transfer, a fundamental step for ATP synthesis. The detailed thermodynamic characterization of a PpcA mutant, in which the strictly conserved residue phenylalanine 15 was replaced by leucine, showed that the global redox network of cooperativities among heme groups is altered, preventing the mutant from performing a concerted electron/proton transfer. In this work, we determined the solution structure of PpcA F15L mutant in the fully reduced state using NMR spectroscopy by producing (15)N-labeled protein. In addition, pH-dependent conformational changes were mapped onto the structure. The mutant structure obtained is well defined, with an average pairwise root-mean-square deviation of 0.36Å for the backbone atoms and 1.14Å for all heavy atoms. Comparison between the mutant and wild-type structures elucidated the contribution of phenylalanine 15 in the modulation of the functional properties of PpcA.

摘要

细胞外电子转移是地杆菌科的生理特征之一。大多数地杆菌物种编码超过100种c型细胞色素,一般来说,这些细胞色素在不同物种之间的保守性较差。周质三血红素c型细胞色素的PpcA家族是个例外,它是这些细菌中含量最丰富的蛋白质。PpcA的功能特性表明,它具有耦合电子/质子转移的必要特性,这是ATP合成的一个基本步骤。对一个PpcA突变体进行详细的热力学表征,其中严格保守的苯丙氨酸15被亮氨酸取代,结果表明血红素基团之间协同作用的整体氧化还原网络发生了改变,阻止了该突变体进行协同的电子/质子转移。在这项工作中,我们通过产生(15)N标记的蛋白质,利用核磁共振光谱法测定了完全还原状态下PpcA F15L突变体的溶液结构。此外,将pH依赖性构象变化映射到该结构上。获得的突变体结构定义明确,主链原子的平均成对均方根偏差为0.36Å,所有重原子的平均成对均方根偏差为1.14Å。突变体与野生型结构之间的比较阐明了苯丙氨酸15对PpcA功能特性调节的贡献。

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