Suppr超能文献

群体感应开关的动力学:随机和非平稳效应。

Dynamics of the quorum sensing switch: stochastic and non-stationary effects.

作者信息

Weber Marc, Buceta Javier

机构信息

Computer Simulation and Modelling (Co,S,Mo,) Lab, Parc Científic de Barcelona, C/ Baldiri Reixac 4, 08028 Barcelona, Spain.

出版信息

BMC Syst Biol. 2013 Jan 16;7:6. doi: 10.1186/1752-0509-7-6.

Abstract

BACKGROUND

A wide range of bacteria species are known to communicate through the so called quorum sensing (QS) mechanism by means of which they produce a small molecule that can freely diffuse in the environment and in the cells. Upon reaching a threshold concentration, the signalling molecule activates the QS-controlled genes that promote phenotypic changes. This mechanism, for its simplicity, has become the model system for studying the emergence of a global response in prokaryotic cells. Yet, how cells precisely measure the signal concentration and act coordinately, despite the presence of fluctuations that unavoidably affects cell regulation and signalling, remains unclear.

RESULTS

We propose a model for the QS signalling mechanism in Vibrio fischeri based on the synthetic strains lux01 and lux02. Our approach takes into account the key regulatory interactions between LuxR and LuxI, the autoinducer transport, the cellular growth and the division dynamics. By using both deterministic and stochastic models, we analyze the response and dynamics at the single-cell level and compare them to the global response at the population level. Our results show how fluctuations interfere with the synchronization of the cell activation and lead to a bimodal phenotypic distribution. In this context, we introduce the concept of precision in order to characterize the reliability of the QS communication process in the colony. We show that increasing the noise in the expression of LuxR helps cells to get activated at lower autoinducer concentrations but, at the same time, slows down the global response. The precision of the QS switch under non-stationary conditions decreases with noise, while at steady-state it is independent of the noise value.

CONCLUSIONS

Our in silico experiments show that the response of the LuxR/LuxI system depends on the interplay between non-stationary and stochastic effects and that the burst size of the transcription/translation noise at the level of LuxR controls the phenotypic variability of the population. These results, together with recent experimental evidences on LuxR regulation in wild-type species, suggest that bacteria have evolved mechanisms to regulate the intensity of those fluctuations.

摘要

背景

已知多种细菌通过所谓的群体感应(QS)机制进行通讯,它们会产生一种能在环境和细胞中自由扩散的小分子。当达到阈值浓度时,信号分子会激活促进表型变化的QS控制基因。由于其简单性,这种机制已成为研究原核细胞中全局反应出现的模型系统。然而,尽管存在不可避免地影响细胞调节和信号传导的波动,细胞如何精确测量信号浓度并协调行动仍不清楚。

结果

我们基于合成菌株lux01和lux02提出了费氏弧菌中QS信号机制的模型。我们的方法考虑了LuxR和LuxI之间的关键调控相互作用、自诱导物转运、细胞生长和分裂动力学。通过使用确定性和随机模型,我们分析了单细胞水平的反应和动力学,并将它们与群体水平的全局反应进行比较。我们的结果表明波动如何干扰细胞激活的同步并导致双峰表型分布。在此背景下,我们引入精度概念以表征群体中QS通讯过程的可靠性。我们表明增加LuxR表达中的噪声有助于细胞在较低自诱导物浓度下被激活,但同时会减缓全局反应。非平稳条件下QS开关的精度随噪声降低,而在稳态时它与噪声值无关。

结论

我们的计算机模拟实验表明,LuxR/LuxI系统的反应取决于非平稳和随机效应之间的相互作用,并且LuxR水平的转录/翻译噪声的爆发大小控制群体的表型变异性。这些结果与最近关于野生型物种中LuxR调控的实验证据一起表明,细菌已经进化出调节这些波动强度的机制。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验