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发育中群落效应的理论基础。

Theoretical basis of the community effect in development.

作者信息

Saka Yasushi, Lhoussaine Cédric, Kuttler Celine, Ullner Ekkehard, Thiel Marco

机构信息

Institute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen AB25 2ZD, UK.

出版信息

BMC Syst Biol. 2011 Apr 17;5:54. doi: 10.1186/1752-0509-5-54.

Abstract

BACKGROUND

Genetically identical cells often show significant variation in gene expression profile and behaviour even in the same physiological condition. Notably, embryonic cells destined to the same tissue maintain a uniform transcriptional regulatory state and form a homogeneous cell group. One mechanism to keep the homogeneity within embryonic tissues is the so-called community effect in animal development. The community effect is an interaction among a group of many nearby precursor cells, and is necessary for them to maintain tissue-specific gene expression and differentiate in a coordinated manner. Although it has been shown that the cell-cell communication by a diffusible factor plays a crucial role, it is not immediately obvious why a community effect needs many cells.

RESULTS

In this work, we propose a model of the community effect in development, which consists in a linear gene cascade and cell-cell communication. We examined the properties of the model theoretically using a combination of stochastic and deterministic modelling methods. We have derived the analytical formula for the threshold size of a cell population that is necessary for a community effect, which is in good agreement with stochastic simulation results.

CONCLUSIONS

Our theoretical analysis indicates that a simple model with a linear gene cascade and cell-cell communication is sufficient to reproduce the community effect in development. The model explains why a community needs many cells. It suggests that the community's long-term behaviour is independent of the initial induction level, although the initiation of a community effect requires a sufficient amount of inducing signal. The mechanism of the community effect revealed by our theoretical analysis is analogous to that of quorum sensing in bacteria. The community effect may underlie the size control in animal development and also the genesis of autosomal dominant diseases including tumorigenesis.

摘要

背景

即使在相同的生理条件下,基因相同的细胞在基因表达谱和行为上也常常表现出显著差异。值得注意的是,注定形成同一组织的胚胎细胞维持着统一的转录调控状态,并形成一个同质的细胞群。在胚胎组织内维持同质性的一种机制是动物发育中所谓的群体效应。群体效应是一群相邻的前体细胞之间的相互作用,对于它们维持组织特异性基因表达并以协调的方式分化是必要的。尽管已经表明可扩散因子介导的细胞间通讯起着关键作用,但群体效应为何需要许多细胞却并不显而易见。

结果

在这项工作中,我们提出了一种发育中的群体效应模型,该模型由线性基因级联和细胞间通讯组成。我们使用随机和确定性建模方法相结合的方式从理论上研究了该模型的特性。我们推导出了群体效应所需的细胞群体阈值大小的解析公式,该公式与随机模拟结果高度吻合。

结论

我们的理论分析表明,一个具有线性基因级联和细胞间通讯的简单模型足以重现发育中的群体效应。该模型解释了群体为何需要许多细胞。它表明,尽管群体效应的启动需要足够量的诱导信号,但群体的长期行为与初始诱导水平无关。我们的理论分析揭示的群体效应机制类似于细菌中的群体感应。群体效应可能是动物发育中大小控制的基础,也是包括肿瘤发生在内的常染色体显性疾病发生的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e8f/3105943/b7217e50b7c4/1752-0509-5-54-1.jpg

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