Centre de Recherche Universitaire de Djibouti, University of Djibouti, Avenue Georges Clemenceau, Djibouti, Djibouti.
J Biol Inorg Chem. 2013 Mar;18(3):333-42. doi: 10.1007/s00775-013-0977-5. Epub 2013 Jan 20.
Evaluating the reactivity of the metal-thiolate clusters in metallothionein (MT) is a key step in understanding the biological functions of this protein. The effects of the metal clustering and protein environment on the thiolate reactivity with hydrogen peroxide (H(2)O(2)) were investigated by performing quantum theory calculations with chemical accuracy at two levels of complexity. At the first level, the reactivity with H(2)O(2) of a model system ((Zn)(3)(MeS)(9), MeS is methanethiolate) of the β domain cluster of MT was evaluated using density functional theory (DFT) with the mPW1PW91 functional. At the second level of complexity, the protein environment was included in the reactant system and the calculations were performed with the hybrid ONIOM method combining the DFT-mPW1PW91 and the semiempirical PM6 levels of theory. In these conditions, the energy barrier for the oxidation of the most reactive terminal thiolate was 21.5 kcal mol(-1). This is 3 kcal mol(-1) higher than that calculated for the terminal thiolate in the model system (Zn)(3)(MeS)(9) and about 7 kcal mol(-1) higher than that obtained for the free thiolate. In spite of this rise of the energy barrier induced by the protein environment, the thiolate oxidation by H(2)O(2) is confirmed as a possible way for metal release from MT. On the other hand, the results suggest that the antioxidant role of MT in the living cell cannot be as important as that of glutathione (which bears a free thiol).
评估金属硫蛋白(MT)中金属-硫醇盐簇的反应性是理解该蛋白质生物功能的关键步骤。通过在两个复杂度水平上使用具有化学精度的量子理论计算,研究了金属簇和蛋白质环境对硫醇盐与过氧化氢(H(2)O(2))反应性的影响。在第一个水平上,使用密度泛函理论(DFT)与 mPW1PW91 函数评估了 MT β 结构域簇模型体系([(Zn)(3)(MeS)(9)](3-),MeS 是甲硫醇盐)与 H(2)O(2)的反应性。在第二个复杂水平上,将蛋白质环境包含在反应物系统中,并使用混合 ONIOM 方法,结合 DFT-mPW1PW91 和半经验 PM6 理论水平进行计算。在这些条件下,最易反应的末端硫醇盐氧化的能垒为 21.5 kcal/mol。这比模型体系中末端硫醇盐[(Zn)(3)(MeS)(9)](3-)计算的值高 3 kcal/mol,比游离硫醇高约 7 kcal/mol。尽管蛋白质环境引起的能垒升高,但 H(2)O(2)氧化硫醇盐被确认为 MT 中金属释放的一种可能途径。另一方面,结果表明 MT 在活细胞中的抗氧化作用不如谷胱甘肽(具有游离硫醇)重要。