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甘氨酸互变异构的综合研究:理论研究。

Comprehensive studies on the tautomerization of glycine: a theoretical study.

机构信息

Department of Chemistry, Inha University, Incheon 402-751, Korea.

出版信息

Org Biomol Chem. 2013 Feb 28;11(8):1407-13. doi: 10.1039/c2ob26602d.

DOI:10.1039/c2ob26602d
PMID:23334558
Abstract

The tautomerization process of glycine between the neutral (NE) and zwitterionic (ZW) forms in aqueous solution was explored theoretically using the conductor-like polarizable continuum model (CPCM) by adopting the PAULING cavity model at the B3LYP, MP2 and CCSD levels with the 6-311+G(d,p) basis set. The tautomerization of glycine is unable to be predicted satisfactorily within the equilibrated framework of the CPCM method. Instead, in this study, three plausible non-equilibrated solvation situations were assumed: (S-1) one water molecule attached to the transferring proton in the ZW moves together with the transferring proton; (S-2) one water molecule attached to the transferring proton in the ZW remains motionless at a fixed position near the NH(2) fragment at the TS structure; and (S-3) proton transfer occurs without changing the position of the surrounding water molecules from their initial state, the ZW form, in the eight water clusters. Although the calculation of (S-3) failed, the Gibbs free energies of activation for tautomerization from the ZW to NE, ΔG(≠)(ZW → NE), was well consistent with the experimental findings in the hypothetical non-equilibrated solvation states of (S-1) and (S-2). This suggests that non-equilibrium solvation is essential to explain the observed experimental data.

摘要

在水溶液中,甘氨酸从中性(NE)到两性离子(ZW)的互变异构过程,采用 PAULING 空穴模型,在 B3LYP、MP2 和 CCSD 水平下,用 6-311+G(d,p)基组,通过导体类似极化连续模型(CPCM)进行了理论探讨。在 CPCM 方法的平衡框架内,甘氨酸的互变异构无法得到满意的预测。相反,在本研究中,假设了三种合理的非平衡溶剂化情况:(S-1)ZW 中转移质子上连接的一个水分子与转移质子一起移动;(S-2)ZW 中连接转移质子的一个水分子在 TS 结构中 NH2 片段附近的固定位置保持不动;(S-3)质子转移不改变其初始状态(ZW 形式)时周围水分子的位置,即在 8 个水分子簇中。尽管(S-3)的计算失败,但从 ZW 到 NE 的互变异构的吉布斯自由能活化能,ΔG(≠)(ZW → NE),与(S-1)和(S-2)的假设非平衡溶剂化状态下的实验结果非常一致。这表明非平衡溶剂化对于解释观察到的实验数据是必不可少的。

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