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中国绒螯蟹(Eriocheir sinensis)附性腺和睾丸的比较转录组分析。

Comparative transcriptome analysis of the accessory sex gland and testis from the Chinese mitten crab (Eriocheir sinensis).

机构信息

School of Life Science, East China Normal University, Shanghai, China.

出版信息

PLoS One. 2013;8(1):e53915. doi: 10.1371/journal.pone.0053915. Epub 2013 Jan 16.

Abstract

The accessory sex gland (ASG) is an important component of the male reproductive system, which functions to enhance the fertility of spermatozoa during male reproduction. Certain proteins secreted by the ASG are known to bind to the spermatozoa membrane and affect its function. The ASG gene expression profile in Chinese mitten crab (Eriocheir sinensis) has not been extensively studied, and limited genetic research has been conducted on this species. The advent of high-throughput sequencing technologies enables the generation of genomic resources within a short period of time and at minimal cost. In the present study, we performed de novo transcriptome sequencing to produce a comprehensive transcript dataset for the ASG of E. sinensis using Illumina sequencing technology. This analysis yielded a total of 33,221,284 sequencing reads, including 2.6 Gb of total nucleotides. Reads were assembled into 85,913 contigs (average 218 bp), or 58,567 scaffold sequences (average 292 bp), that identified 37,955 unigenes (average 385 bp). We assembled all unigenes and compared them with the published testis transcriptome from E. sinensis. In order to identify which genes may be involved in ASG function, as it pertains to modification of spermatozoa, we compared the ASG and testis transcriptome of E. sinensis. Our analysis identified specific genes with both higher and lower tissue expression levels in the two tissues, and the functions of these genes were analyzed to elucidate their potential roles during maturation of spermatozoa. Availability of detailed transcriptome data from ASG and testis in E. sinensis can assist our understanding of the molecular mechanisms involved with spermatozoa conservation, transport, maturation and capacitation and potentially acrosome activation.

摘要

附属性腺(ASG)是男性生殖系统的重要组成部分,其功能是在雄性生殖过程中增强精子的生育能力。某些由 ASG 分泌的蛋白质已知会与精子膜结合并影响其功能。中华绒螯蟹(Eriocheir sinensis)的 ASG 基因表达谱尚未得到广泛研究,对该物种的遗传研究也很有限。高通量测序技术的出现使得在短时间内以最小的成本生成基因组资源成为可能。在本研究中,我们使用 Illumina 测序技术对 E. sinensis 的 ASG 进行了从头转录组测序,生成了一个全面的转录数据集。该分析共产生了 33221284 条测序reads,包括 2.6Gb 的总核苷酸。reads 组装成 85913 个 contigs(平均 218bp)或 58567 个 scaffold 序列(平均 292bp),鉴定出 37955 个 unigenes(平均 385bp)。我们组装了所有的 unigenes,并与已发表的 E. sinensis 睾丸转录组进行了比较。为了确定哪些基因可能参与 ASG 功能,因为它涉及到精子的修饰,我们比较了 E. sinensis 的 ASG 和睾丸转录组。我们的分析确定了两个组织中具有更高和更低组织表达水平的特定基因,并对这些基因的功能进行了分析,以阐明它们在精子成熟过程中的潜在作用。E. sinensis 的 ASG 和睾丸的详细转录组数据的可用性可以帮助我们理解涉及精子保存、运输、成熟和获能以及潜在顶体激活的分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcd4/3547057/f6731cd8f6f9/pone.0053915.g001.jpg

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