Institute of Thermal Separation Processes, Hamburg University of Technology, Eissendorfer Strasse 38, D-21073 Hamburg, Germany.
Langmuir. 2013 Mar 19;29(11):3527-37. doi: 10.1021/la305035b. Epub 2013 Mar 8.
Liposomes and micelles find various applications as potential solubilizers in extraction processes or in drug delivery systems. Thermodynamic and transport processes governing the interactions of different kinds of solutes in liposomes or micelles can be analyzed regarding the free energy profiles of the solutes in the system. However, free energy profiles in heterogeneous systems such as micelles are experimentally almost not accessible. Therefore, the development of predictive methods is desirable. Molecular dynamics (MD) simulations reliably simulate the structure and dynamics of lipid membranes and micelles, whereas COSMO-RS accurately reproduces solvation free energies in different solvents. For the first time, free energy profiles in micellar systems, as well as mixed lipid bilayers, are investigated, taking advantage of both methods: MD simulations and COSMO-RS, referred to as COSMOmic (Klamt, A.; Huniar, U.; Spycher, S.; Keldenich, J. COSMOmic: A Mechanistic Approach to the Calculation of Membrane-Water Partition Coefficients and Internal Distributions within Membranes and Micelles. J. Phys. Chem. B 2008, 112, 12148-12157). All-atom molecular dynamics simulations of the system SDS/water and CTAB/water have been applied in order to retrieve representative micelle structures for further analysis with COSMOmic. For the system CTAB/water, different surfactant concentrations were considered, which results in different micelle sizes. Free energy profiles of more than 200 solutes were predicted and validated by means of experimental partition coefficients. To our knowledge, these are the first quantitative predictions of micelle/water partition coefficients, which are based on whole free energy profiles from molecular methods. Further, the partitioning in lipid bilayer systems containing different hydrophobic tail groups (DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine), SOPC (stearoyl-oleoylphosphatidylcholine), DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine), and POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine)) as well as mixed bilayers was calculated. Experimental partition coefficients (log P) were reproduced with a root-mean-square error (RMSE) of 0.62. To determine the influence of cholesterol as an important component of cellular membranes, free energy profiles in the presence of cholesterol were calculated and shown to be in good agreement with experimental data.
脂质体和胶束作为潜在的增溶剂,在提取过程或药物传递系统中有着广泛的应用。可以通过分析体系中溶质的自由能曲线来研究不同种类溶质在脂质体或胶束中的热力学和输运过程。然而,对于胶束等多相体系的自由能曲线,实验上几乎无法获得。因此,开发预测方法是非常有必要的。分子动力学(MD)模拟可以可靠地模拟脂质膜和胶束的结构和动力学,而 COMSO-RS 可以准确地再现不同溶剂中的溶剂化自由能。本文首次利用 MD 模拟和 COMSO-RS(称为 COSMOmic)两种方法,研究了胶束体系以及混合脂质双层中的自由能曲线,这两种方法分别是:分子动力学模拟和 COMSO-RS。采用全原子分子动力学模拟 SDS/水和 CTAB/水体系,以获取代表性胶束结构,然后进一步用 COSMOmic 进行分析。对于 CTAB/水体系,考虑了不同的表面活性剂浓度,这导致了不同的胶束尺寸。预测了 200 多种溶质的自由能曲线,并通过实验分配系数进行了验证。据我们所知,这些是基于分子方法的全自由能曲线的第一个关于胶束/水分配系数的定量预测。此外,还计算了含有不同疏水尾基团的脂质双层体系(DOPC(1,2-二油酰基-sn-甘油-3-磷酸胆碱)、SOPC(硬脂酰-油酰基磷脂酰胆碱)、DMPC(1,2-二肉豆蔻酰-sn-甘油-3-磷酸胆碱)和 POPC(1-棕榈酰基-2-油酰基-sn-甘油-3-磷酸胆碱))以及混合双层的分配情况。实验分配系数(log P)的重现误差(RMSE)为 0.62。为了确定胆固醇作为细胞膜重要组成部分的影响,计算了存在胆固醇时的自由能曲线,并与实验数据吻合良好。