Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany.
J Am Chem Soc. 2013 Mar 13;135(10):3915-25. doi: 10.1021/ja3115899. Epub 2013 Feb 27.
The light-induced Ni-L state of [NiFe] hydrogenases is well suited to investigate the identity of the amino acid base that functions as a proton acceptor in the hydrogen turnover cycle in this important class of enzymes. Density functional theory calculations have been performed on large models that include the complete [NiFe] center and parts of the second coordination sphere. Combined with experimental data, in particular from electron paramagnetic resonance and Fourier transform infrared (FTIR) spectroscopy, the calculations indicate that the hydride ion, which is located in the bridging position between nickel and iron in the Ni-C state, dissociates upon illumination as a proton and binds to a nearby thiolate base. Moreover, the formation of a functionally relevant nickel-iron bond upon dissociation of the hydride is unequivocally observed and is in full agreement with the observed g values, ligand hyperfine coupling constants, and FTIR stretching frequencies. This metal-metal bond can be protonated and thus functions like a base. The nickel-iron bond is important for all intermediates with an empty bridge in the catalytic cycle, and the electron pair that constitutes this bond thus plays a crucial role in the hydrogen evolution catalyzed by the enzyme.
[NiFe]氢化酶的光诱导 Ni-L 态非常适合研究在这个重要酶类的氢循环中作为质子受体起作用的氨基酸碱基。我们对包含完整[NiFe]中心和第二配位层部分的大型模型进行了密度泛函理论计算。结合实验数据,特别是电子顺磁共振和傅里叶变换红外(FTIR)光谱,计算表明,在 Ni-C 态中位于镍和铁之间桥接位置的氢化物离子在光照下会作为质子离解,并与附近的硫醇盐碱基结合。此外,在氢化物离解时形成功能相关的镍-铁键得到了明确的观察,并与观察到的 g 值、配体超精细耦合常数和 FTIR 伸缩频率完全一致。这个金属-金属键可以质子化,因此可以像碱基一样起作用。在催化循环中,具有空桥的所有中间体都需要这个镍-铁键,构成这个键的电子对在酶催化的氢析出中起着至关重要的作用。