Johansen J T, Vallee B L
Biochemistry. 1975 Feb 25;14(4):649-60. doi: 10.1021/bi00675a001.
Reaction of carboxypeptidase A crystals with diazotized arsanilic acid uniquely modifies Tyr-248 to form a monazo derivative, which-in solution-forms an intramolecular inner-sphere coordination complex in the active site zinc atom. tarsanilazocarboxypeptidase exhibits spectral properties that are closely similar to those of the model complex, tetrazolylazo-N-carbobenzoxytyrosine Zn2+, with a distinctive maximum at 510 nm. In addition, its circular dichroic spectrum reveals a negative extremum at this wavelength, also characteristic of this complex. Both spectra are exquisitely responsive to pth changes and serve to monitor formation and dissociation of the metal-azophenol complex. Two pKapp at 7.7 and 9.5 delineate the pH range over which the probe characteristics most effectively gauge conformational features of the active center of arsanilazcarboxypeptidase. Other environmental parameters, e.g., substrates and inhibitors, as well as crystallization of the enzyme also critically influence the formation and dissociation of the complex; the response of the probe suggests that they induce conformational movement of the azoTyr-248 residue away from the zinc atom. tthe now available chemical, functional, structural data bearing on the spatial relationships of Tyr-248 and Zn, both thought critical to catalysis, are evaluated, based on spectra of arsanilazo- and nitrocarboxypeptidase crystals and solutions as well as on detailed kinetic analyses of the native enzyme in both physical states and based on the X-ray structure analysis of the native enzyme and its Gly-L-Tyr complex. Collectively all of the data show that the conformation of carboxypeptidase in crystals differs from that in solution. Moreover, reexamination of the original X-ray maps reported in 1968 and thought to preclude a Tyr-248-Zn interaction now leads to the conclusion that in up to 25 per cent of the molecules in the crystals ttyr-248 interacts with the active site zinc atom (W.D. Lipscomb (1973), Proc. Nat. Acad. Sci U.S. 70, 3797). Thus, even in the crystals the enzyme exists in at least two different conformations. In one of these Tyr-248 is near while in the other it is far from the zinc atom. The spectral effects of Gly-L-Tyr and beta-phenylpropionate on solutions of arsanilazo- and of nitrocarboxypeptidase demonstrate that during the catalytic process Tyr-248 moves away from the zinc atom. This implies a mechanistic role for Tyr-248 different from that postulated on the basis of X-ray crystallographic analysis. Indeed, the proximity of ttyr-248 to the zinc atom, when altered by substrates and inhibitor, may reflect certain of the properties characteristic of the entatic, active site.
羧肽酶A晶体与重氮化对氨基苯胂酸反应能独特地修饰Tyr-248,形成单偶氮衍生物,该衍生物在溶液中会在活性位点锌原子上形成分子内的内球配位络合物。对氨基苯胂羧肽酶表现出的光谱特性与模型络合物四唑基偶氮-N-苄氧羰基酪氨酸Zn2+极为相似,在510nm处有一个独特的最大值。此外,其圆二色光谱在此波长处显示出一个负极值,这也是该络合物的特征。这两种光谱对pH变化都极为敏感,可用于监测金属偶氮酚络合物的形成和解离。7.7和9.5处两个表观pK值划定了pH范围,在此范围内该探针特性能最有效地衡量对氨基苯胂羧肽酶活性中心的构象特征。其他环境参数,如底物和抑制剂,以及酶的结晶情况也对络合物的形成和解离有至关重要的影响;探针的响应表明它们会诱导偶氮Tyr-248残基远离锌原子的构象移动。基于对氨基苯胂羧肽酶晶体和溶液的光谱以及对两种物理状态下天然酶的详细动力学分析,还有基于天然酶及其甘氨酰-L-酪氨酸络合物的X射线结构分析,对现有的与Tyr-248和Zn的空间关系相关化学、功能和结构数据进行了评估,而Tyr-248和Zn都被认为对催化至关重要。所有数据共同表明,羧肽酶在晶体中的构象与在溶液中的不同。此外,重新审视1968年报道的最初X射线图谱,当时认为该图谱排除了Tyr-248与锌原子的相互作用,现在得出的结论是,在晶体中高达25%的分子中,Tyr-248与活性位点锌原子相互作用(W.D.利普斯科姆(1973年),美国国家科学院院刊70,3797)。因此,即使在晶体中,该酶也至少以两种不同构象存在。在其中一种构象中,Tyr-248靠近锌原子,而在另一种构象中则远离锌原子。甘氨酰-L-酪氨酸和β-苯丙酸对对氨基苯胂羧肽酶和硝基羧肽酶溶液的光谱效应表明,在催化过程中Tyr-248会远离锌原子。这意味着Tyr-248的作用机制与基于X射线晶体学分析所假设的不同。实际上,当Tyr-248与锌原子的距离因底物和抑制剂而改变时,可能反映了活性位点处于应变状态时的某些特性。