• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子内的 O-H···F 和 O-H···Cl 氢键在溶液中是否存在?一项理论研究。

Are the intramolecular O-H···F and O-H···Cl hydrogen bonds maintained in solution? A theoretical study.

机构信息

Center for Drug Design and Development, The University of Toledo, Toledo, Ohio 43606-3390, USA.

出版信息

J Phys Chem A. 2013 Apr 4;117(13):2812-26. doi: 10.1021/jp310596c. Epub 2013 Mar 25.

DOI:10.1021/jp310596c
PMID:23480798
Abstract

The present case study aims at calculating the equilibrium conformer compositions for 2X-ethanol and 2X-phenol (X = F, Cl) in solution, and exploring the effect of the applied theoretical method and basis set on the obtained results, as well as considering the usefulness of the continuum solvent approach in comparison with the explicit solvent Monte Carlo model utilizing the free energy perturbation method. Gas-phase optimizations at the DFT/B97D/aug-cc-pvtz and ab initio MP2/aug-cc-pvtz levels predicted structures in good agreement with the available experimental data for three test molecules. Because in-solution geometries change only slightly according to the IEF-PCM continuum solvent calculations in carbon tetrachloride and water, the two theoretical levels were applied further on, and complete basis set (CBS) relative internal free energies were estimated for the conformers under study. The predicted OCCF gauche/trans ratio for 2F-ethanol was well reproduced in comparison with available experimental compositions. The predominant gauche structure maintains an intramolecular hydrogen bond in carbon tetrachloride (HB structure), whereas HB and NoHB gauche conformers appear in nearly the same fraction in aqueous solution. The internally hydrogen-bonded conformer is predominant also for 2X-phenol species, as calculated on the basis of relative CBS internal free energies and IEF-PCM and FEP/MC solvation free energies. Use of a trihydrate supermolecule model for 2F-ethanol conformers leads to the prediction of the aqueous-solution composition in contrast to the experiment. Solution structure modeling predicts weak hydrogen-bond formation capacity for both the covalently bound F and Cl atoms, even in conformations where they are fully exposed to hydration.

摘要

本案例研究旨在计算 2X-乙醇和 2X-苯酚(X = F,Cl)在溶液中的平衡构象组成,并探讨所应用的理论方法和基组对所得结果的影响,同时考虑连续相溶剂方法与利用自由能微扰法的显式溶剂 Monte Carlo 模型相比的有用性。在 DFT/B97D/aug-cc-pvtz 和从头算 MP2/aug-cc-pvtz 水平上进行的气相优化,预测出的结构与三种测试分子的可用实验数据非常吻合。由于根据 IEF-PCM 连续相溶剂计算,在四氯化碳和水中的溶液构象变化很小,因此进一步应用了这两个理论水平,并对研究构象进行了完全基组(CBS)相对内部自由能的估算。与可用实验组成相比,预测的 2F-乙醇的 OCCF gauche/trans 比例得到了很好的重现。在四氯化碳中,主要的 gauche 结构保持着分子内氢键(HB 结构),而在水溶液中,HB 和 NoHB gauche 构象则以几乎相同的比例出现。基于相对 CBS 内部自由能和 IEF-PCM 和 FEP/MC 溶剂化自由能,内氢键合构象在 2X-苯酚物种中也占主导地位。使用三水合超分子模型对 2F-乙醇构象进行计算,导致预测的水溶液组成与实验结果相反。溶液结构建模预测,即使在它们完全暴露于水合作用的构象中,共价键合的 F 和 Cl 原子也具有较弱的形成氢键的能力。

相似文献

1
Are the intramolecular O-H···F and O-H···Cl hydrogen bonds maintained in solution? A theoretical study.分子内的 O-H···F 和 O-H···Cl 氢键在溶液中是否存在?一项理论研究。
J Phys Chem A. 2013 Apr 4;117(13):2812-26. doi: 10.1021/jp310596c. Epub 2013 Mar 25.
2
Theoretical studies of the solvent effect on the conformation of the HO-C-C-X (X = F, NH2, NO2) moiety with competing intra- and intermolecular hydrogen bonds.溶剂效应对具有竞争内、分子氢键的 HO-C-C-X(X = F、NH2、NO2)部分构象的理论研究。
J Phys Chem A. 2012 Jul 26;116(29):7726-41. doi: 10.1021/jp304164g. Epub 2012 Jul 17.
3
Theoretical study of the gauche-trans equilibrium with and without an intramolecular hydrogen bond for +H3NCH2CH2X systems (X = OH, NH2, COO-) in solution.在溶液中对 +H3NCH2CH2X 体系(X = OH、NH2、COO-)进行有无分子内氢键的 gauche-trans 平衡的理论研究。
Phys Chem Chem Phys. 2012 Oct 28;14(40):13955-62. doi: 10.1039/c2cp42240a. Epub 2012 Sep 13.
4
Theoretical in-Solution Conformational/Tautomeric Analyses for Chain Systems with Conjugated Double Bonds Involving Nitrogen(s).含氮共轭双键链状体系的理论溶液构象/互变异构分析
Int J Mol Sci. 2015 May 13;16(5):10767-96. doi: 10.3390/ijms160510767.
5
Ab initio study of hydrogen-bond formation between aliphatic and phenolic hydroxy groups and selected amino acid side chains.脂肪族羟基和酚羟基与选定氨基酸侧链之间氢键形成的从头算研究。
J Phys Chem A. 2008 May 8;112(18):4342-54. doi: 10.1021/jp7108847. Epub 2008 Mar 29.
6
Theoretical study of the enol imine <--> enaminone tautomeric equilibrium in organic solvents.有机溶剂中烯醇亚胺⇌烯胺酮互变异构平衡的理论研究
J Phys Chem B. 2006 Dec 14;110(49):25026-32. doi: 10.1021/jp064639m.
7
Theoretical conformational analysis for neurotransmitters in the gas phase and in aqueous solution. Norepinephrine.气相和水溶液中神经递质的理论构象分析。去甲肾上腺素。
J Am Chem Soc. 2003 Mar 5;125(9):2770-85. doi: 10.1021/ja028952n.
8
Electron propagator theory study of N-/O-methylglycine conformers.N-/O-甲基甘氨酸构象体的电子传播子理论研究
J Chem Phys. 2005 Dec 22;123(24):244310. doi: 10.1063/1.2139996.
9
Solvation effects on alanine dipeptide: A MP2/cc-pVTZ//MP2/6-31G** study of (Phi, Psi) energy maps and conformers in the gas phase, ether, and water.溶剂化对丙氨酸二肽的影响:在气相、乙醚和水中对(φ,ψ)能量图和构象异构体的MP2/cc-pVTZ//MP2/6-31G**研究
J Comput Chem. 2004 Nov 15;25(14):1699-716. doi: 10.1002/jcc.20092.
10
Combined ab initio/DFT and Monte Carlo calculation of relative standard chemical potentials in solution.采用从头算/密度泛函理论和蒙特卡罗计算相结合的方法,计算溶液中的相对标准化学势。
J Phys Chem B. 2011 Aug 11;115(31):9634-45. doi: 10.1021/jp204018s. Epub 2011 Jul 8.

引用本文的文献

1
PET recycling under mild conditions substituent-modulated intramolecular hydrolysis.温和条件下的PET回收:取代基调控的分子内水解
Chem Sci. 2023 May 25;14(24):6558-6563. doi: 10.1039/d3sc01161e. eCollection 2023 Jun 21.
2
Replacement of Oxygen by Sulfur in Small Organic Molecules. 3. Theoretical Studies on the Tautomeric Equilibria of the 2OH and 4OH-Substituted Oxazole and Thiazole and the 3OH and 4OH-Substituted Isoxazole and Isothiazole in the Isolated State and in Solution.小有机分子中氧被硫取代。3. 2-羟基和4-羟基取代的恶唑及噻唑以及3-羟基和4-羟基取代的异恶唑及异噻唑在孤立状态及溶液中的互变异构平衡的理论研究。
Int J Mol Sci. 2016 Jul 9;17(7):1094. doi: 10.3390/ijms17071094.
3
Theoretical in-Solution Conformational/Tautomeric Analyses for Chain Systems with Conjugated Double Bonds Involving Nitrogen(s).
含氮共轭双键链状体系的理论溶液构象/互变异构分析
Int J Mol Sci. 2015 May 13;16(5):10767-96. doi: 10.3390/ijms160510767.
4
Competing intramolecular vs. intermolecular hydrogen bonds in solution.溶液中分子内与分子间氢键的竞争
Int J Mol Sci. 2014 Oct 28;15(11):19562-633. doi: 10.3390/ijms151119562.