Center for Drug Design and Development, The University of Toledo, Toledo, Ohio 43606-3390, USA.
J Phys Chem A. 2013 Apr 4;117(13):2812-26. doi: 10.1021/jp310596c. Epub 2013 Mar 25.
The present case study aims at calculating the equilibrium conformer compositions for 2X-ethanol and 2X-phenol (X = F, Cl) in solution, and exploring the effect of the applied theoretical method and basis set on the obtained results, as well as considering the usefulness of the continuum solvent approach in comparison with the explicit solvent Monte Carlo model utilizing the free energy perturbation method. Gas-phase optimizations at the DFT/B97D/aug-cc-pvtz and ab initio MP2/aug-cc-pvtz levels predicted structures in good agreement with the available experimental data for three test molecules. Because in-solution geometries change only slightly according to the IEF-PCM continuum solvent calculations in carbon tetrachloride and water, the two theoretical levels were applied further on, and complete basis set (CBS) relative internal free energies were estimated for the conformers under study. The predicted OCCF gauche/trans ratio for 2F-ethanol was well reproduced in comparison with available experimental compositions. The predominant gauche structure maintains an intramolecular hydrogen bond in carbon tetrachloride (HB structure), whereas HB and NoHB gauche conformers appear in nearly the same fraction in aqueous solution. The internally hydrogen-bonded conformer is predominant also for 2X-phenol species, as calculated on the basis of relative CBS internal free energies and IEF-PCM and FEP/MC solvation free energies. Use of a trihydrate supermolecule model for 2F-ethanol conformers leads to the prediction of the aqueous-solution composition in contrast to the experiment. Solution structure modeling predicts weak hydrogen-bond formation capacity for both the covalently bound F and Cl atoms, even in conformations where they are fully exposed to hydration.
本案例研究旨在计算 2X-乙醇和 2X-苯酚(X = F,Cl)在溶液中的平衡构象组成,并探讨所应用的理论方法和基组对所得结果的影响,同时考虑连续相溶剂方法与利用自由能微扰法的显式溶剂 Monte Carlo 模型相比的有用性。在 DFT/B97D/aug-cc-pvtz 和从头算 MP2/aug-cc-pvtz 水平上进行的气相优化,预测出的结构与三种测试分子的可用实验数据非常吻合。由于根据 IEF-PCM 连续相溶剂计算,在四氯化碳和水中的溶液构象变化很小,因此进一步应用了这两个理论水平,并对研究构象进行了完全基组(CBS)相对内部自由能的估算。与可用实验组成相比,预测的 2F-乙醇的 OCCF gauche/trans 比例得到了很好的重现。在四氯化碳中,主要的 gauche 结构保持着分子内氢键(HB 结构),而在水溶液中,HB 和 NoHB gauche 构象则以几乎相同的比例出现。基于相对 CBS 内部自由能和 IEF-PCM 和 FEP/MC 溶剂化自由能,内氢键合构象在 2X-苯酚物种中也占主导地位。使用三水合超分子模型对 2F-乙醇构象进行计算,导致预测的水溶液组成与实验结果相反。溶液结构建模预测,即使在它们完全暴露于水合作用的构象中,共价键合的 F 和 Cl 原子也具有较弱的形成氢键的能力。