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1
Effect of genetic modification of tyrosine-185 on the proton pump and the blue-to-purple transition in bacteriorhodopsin.酪氨酸-185的基因修饰对质子泵及细菌视紫红质中蓝光到紫光转变的影响。
Proc Natl Acad Sci U S A. 1990 Jun;87(11):4103-7. doi: 10.1073/pnas.87.11.4103.
2
Static and time-resolved absorption spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: evidence for an equilibrium between bR570 and an O-like species.细菌视紫红质突变体Tyr-185→Phe的静态和时间分辨吸收光谱:bR570与一种O样物种之间平衡的证据
Biochemistry. 1993 Mar 9;32(9):2263-71. doi: 10.1021/bi00060a019.
3
Two groups control light-induced Schiff base deprotonation and the proton affinity of Asp85 in the Arg82 his mutant of bacteriorhodopsin.两组控制光诱导席夫碱去质子化和 Arg82His 突变菌紫质中 Asp85 的质子亲和力。
Biophys J. 1999 Nov;77(5):2750-63. doi: 10.1016/s0006-3495(99)77108-0.
4
Time-resolved Fourier transform infrared spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: Asp-96 reprotonates during O formation; Asp-85 and Asp-212 deprotonate during O decay.细菌视紫红质突变体Tyr-185→Phe的时间分辨傅里叶变换红外光谱:在O形成过程中Asp-96重新质子化;在O衰减过程中Asp-85和Asp-212去质子化。
Photochem Photobiol. 1992 Dec;56(6):1085-95. doi: 10.1111/j.1751-1097.1992.tb09732.x.
5
Ultraviolet-visible transient spectroscopy of bacteriorhodopsin mutants. Evidence for two forms of tyrosine-185----phenylalanine.细菌视紫红质突变体的紫外-可见瞬态光谱。酪氨酸-185→苯丙氨酸两种形式的证据。
J Biol Chem. 1990 Oct 5;265(28):16978-84.
6
Purple-to-blue transition of bacteriorhodopsin in a neutral lipid environment.细菌视紫红质在中性脂质环境中的紫到蓝转变。
Biophys J. 1988 Aug;54(2):227-32. doi: 10.1016/S0006-3495(88)82951-5.
7
Solid-state 13C and 15N NMR study of the low pH forms of bacteriorhodopsin.细菌视紫红质低pH形式的固态¹³C和¹⁵N核磁共振研究。
Biochemistry. 1990 Jul 24;29(29):6873-83. doi: 10.1021/bi00481a017.
8
Fourier transform Raman spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: formation of a stable O-like species during light adaptation and detection of its transient N-like photoproduct.细菌视紫红质突变体Tyr-185→Phe的傅里叶变换拉曼光谱:光适应过程中稳定的O样物种的形成及其瞬态N样光产物的检测
Biochemistry. 1993 Mar 9;32(9):2272-81. doi: 10.1021/bi00060a020.
9
Effect of the arginine-82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release, and the photochemical cycle.细菌视紫红质中精氨酸82突变为丙氨酸对暗适应、质子释放和光化学循环的影响。
Biochemistry. 1993 Oct 5;32(39):10331-43. doi: 10.1021/bi00090a008.
10
Protonation state of Asp (Glu)-85 regulates the purple-to-blue transition in bacteriorhodopsin mutants Arg-82----Ala and Asp-85----Glu: the blue form is inactive in proton translocation.天冬氨酸(谷氨酸)-85的质子化状态调节细菌视紫红质突变体Arg-82→Ala和Asp-85→Glu中从紫色到蓝色的转变:蓝色形式在质子转运中无活性。
Proc Natl Acad Sci U S A. 1990 Feb;87(3):1013-7. doi: 10.1073/pnas.87.3.1013.

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1
Dynamic Coupling of Tyrosine 185 with the Bacteriorhodopsin Photocycle, as Revealed by Chemical Shifts, Assisted AF-QM/MM Calculations and Molecular Dynamic Simulations.化学位移辅助的 AF-QM/MM 计算和分子动力学模拟揭示视紫红质光循环中酪氨酸 185 的动态偶联。
Int J Mol Sci. 2021 Dec 18;22(24):13587. doi: 10.3390/ijms222413587.
2
Structure of a retinal chromophore of dark-adapted middle rhodopsin as studied by solid-state nuclear magnetic resonance spectroscopy.通过固态核磁共振光谱研究暗适应中间视紫红质的视网膜发色团结构。
Biophys Physicobiol. 2021 Jul 14;18:177-185. doi: 10.2142/biophysico.bppb-v18.019. eCollection 2021.
3
Circular dichroism and photocycle kinetics of partially detergent solubilized and partially retinal regenerated bacteriorhodopsin.部分去污剂溶解和部分视黄醛再生菌紫质的圆二色性和光循环动力学。
Biophys J. 1991 Jan;59(1):70-5. doi: 10.1016/S0006-3495(91)82199-3.
4
Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.影响蛋白质中电子和质子转移能量学的因素。从计算中能学到什么。
Biochim Biophys Acta. 2006 Aug;1757(8):942-68. doi: 10.1016/j.bbabio.2006.06.005. Epub 2006 Jun 17.
5
Protein-assisted pericyclic reactions: an alternate hypothesis for the action of quantal receptors.蛋白质辅助的周环反应:量子受体作用的另一种假说。
Biophys J. 1999 Dec;77(6):2920-9. doi: 10.1016/S0006-3495(99)77125-0.
6
Effects of individual genetic substitutions of arginine residues on the deprotonation and reprotonation kinetics of the Schiff base during the bacteriorhodopsin photocycle.细菌视紫红质光循环过程中精氨酸残基的单个基因替换对席夫碱去质子化和再质子化动力学的影响。
Biophys J. 1991 Jul;60(1):172-8. doi: 10.1016/S0006-3495(91)82040-9.

本文引用的文献

1
Evidence for the involvement of more than one metal cation in the Schiff base deprotonation process during the photocycle of bacteriorhodopsin.证据表明,在菌紫质的光循环过程中,席夫碱去质子化过程涉及到不止一种金属阳离子。
Proc Natl Acad Sci U S A. 1987 Jun;84(12):4094-8. doi: 10.1073/pnas.84.12.4094.
2
Specific amino acid substitutions in bacterioopsin: Replacement of a restriction fragment in the structural gene by synthetic DNA fragments containing altered codons.细菌视紫红质中特定氨基酸的取代:用含有改变了的密码子的合成 DNA 片段替换结构基因中的限制酶片段。
Proc Natl Acad Sci U S A. 1984 Apr;81(8):2285-9. doi: 10.1073/pnas.81.8.2285.
3
On the molecular mechanisms of the Schiff base deprotonation during the bacteriorhodopsin photocycle.细菌视紫红质光循环过程中席夫碱去质子化的分子机制。
Proc Natl Acad Sci U S A. 1986 Nov;83(22):8580-4. doi: 10.1073/pnas.83.22.8580.
4
Proton conduction in bacteriorhodopsin via a hydrogen-bonded chain with large proton polarizability.细菌视紫红质中通过具有大质子极化率的氢键链进行质子传导。
Biochem Biophys Res Commun. 1981 Jul 30;101(2):540-6. doi: 10.1016/0006-291x(81)91293-6.
5
Reconstitution of delipidated bacteriorhodopsin with endogenous polar lipids.用内源性极性脂质重构脱脂细菌视紫红质。
J Biol Chem. 1981 Aug 25;256(16):8298-305.
6
Environmental effects on formation and photoreaction of the M412 photoproduct of bacteriorhodopsin: implications for the mechanism of proton pumping.环境对细菌视紫红质M412光产物形成及光反应的影响:对质子泵浦机制的启示
Biochemistry. 1981 Feb 3;20(3):649-55. doi: 10.1021/bi00506a031.
7
Site of attachment of retinal in bacteriorhodopsin.细菌视紫红质中视黄醛的附着位点。
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2225-9. doi: 10.1073/pnas.78.4.2225.
8
Time-resolved protein fluorescence studies of intermediates in the photochemical cycle of bacteriorhodopsin.细菌视紫红质光化学循环中间体的时间分辨蛋白质荧光研究。
Proc Natl Acad Sci U S A. 1981 Jan;78(1):252-5. doi: 10.1073/pnas.78.1.252.
9
On the protein (tyrosine)-chromophore (protonated Schiff base) coupling in bacteriorhodopsin.关于细菌视紫红质中蛋白质(酪氨酸)-发色团(质子化席夫碱)的偶联
Proc Natl Acad Sci U S A. 1984 Nov;81(22):7083-7. doi: 10.1073/pnas.81.22.7083.
10
Salt and pH-dependent changes of the purple membrane absorption spectrum.紫膜吸收光谱的盐和pH依赖性变化。
Photochem Photobiol. 1984 Nov;40(5):641-6. doi: 10.1111/j.1751-1097.1984.tb05353.x.

酪氨酸-185的基因修饰对质子泵及细菌视紫红质中蓝光到紫光转变的影响。

Effect of genetic modification of tyrosine-185 on the proton pump and the blue-to-purple transition in bacteriorhodopsin.

作者信息

Jang D J, el-Sayed M A, Stern L J, Mogi T, Khorana H G

机构信息

Department of Chemistry and Biochemistry, University of California, Los Angeles 90024.

出版信息

Proc Natl Acad Sci U S A. 1990 Jun;87(11):4103-7. doi: 10.1073/pnas.87.11.4103.

DOI:10.1073/pnas.87.11.4103
PMID:2349220
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC54055/
Abstract

The retinylidene chromophore mutant (Y185F) of bacteriorhodopsin, in which Tyr-185 is substituted by phenylalanine, is examined and compared with wild-type bacteriorhodopsin expressed in Escherichia coli; both were reinstituted similarly in vesicles. The Y185F mutant shows (at least) two distinct spectra at neutral pH. Upon light absorption, the blue species (which absorbs in the red) behaves as if "dead"--i.e., neither its tyrosine nor its protonated Schiff base undergoes deprotonation nor does its tryptophan fluorescence undergo quenching. This result is unlike either the purple species (which absorbs in the blue) or wild-type bacteriorhodopsin expressed in E. coli. As the pH increases, both the color changes and the protonated Schiff base deprotonation efficiency suggest a blue-to-purple transition of the Y185F mutant near pH 9. If this blue-to-purple transition of Y185F corresponds to the blue-to-purple transition of purple-membrane (native) bacteriorhodopsin (occurring at pH 2.6) and of wild-type bacteriorhodopsin expressed in E. coli (occurring at pH 5), the protein-conformation changes of this transition as well as the protonated Schiff base deprotonation may be controlled not by surface pH alone, but rather by the coupling between surface potential and the general protein internal structure around the active site. The results also suggest that Tyr-185 does not deprotonate during the photocycle in purple-membrane bacteriorhodopsin.

摘要

对细菌视紫红质的视黄醛发色团突变体(Y185F)进行了研究,其中酪氨酸-185被苯丙氨酸取代,并与在大肠杆菌中表达的野生型细菌视紫红质进行了比较;两者在囊泡中以类似方式重新构建。Y185F突变体在中性pH下显示(至少)两种不同的光谱。在光吸收时,蓝色物种(在红色区域吸收)表现得好像“死亡”——即其酪氨酸和质子化席夫碱都不发生去质子化,其色氨酸荧光也不发生猝灭。这一结果与紫色物种(在蓝色区域吸收)或在大肠杆菌中表达的野生型细菌视紫红质都不同。随着pH值升高,颜色变化和质子化席夫碱去质子化效率都表明Y185F突变体在pH接近9时发生从蓝色到紫色的转变。如果Y185F的这种从蓝色到紫色的转变对应于紫色膜(天然)细菌视紫红质(在pH 2.6时发生)和在大肠杆菌中表达的野生型细菌视紫红质(在pH 5时发生)的从蓝色到紫色的转变,那么这种转变的蛋白质构象变化以及质子化席夫碱去质子化可能不仅受表面pH控制,还受表面电位与活性位点周围一般蛋白质内部结构之间的耦合控制。结果还表明,在紫色膜细菌视紫红质的光循环过程中,酪氨酸-185不会去质子化。