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猪 PBMC 对破伤风类毒素疫苗接种的转录组反应:以模型抗原为模型

Transcriptomic response of porcine PBMCs to vaccination with tetanus toxoid as a model antigen.

机构信息

Leibniz Institute for Farm Animal Biology (FBN), Institute for Genome Biology, Dummerstorf, Germany.

出版信息

PLoS One. 2013;8(3):e58306. doi: 10.1371/journal.pone.0058306. Epub 2013 Mar 25.

Abstract

The aim of the present study was to characterize in vivo genome-wide transcriptional responses to immune stimulation in order to get insight into the resulting changes of allocation of resources. Vaccination with tetanus toxoid was used as a model for a mixed Th1 and Th2 immune response in pig. Expression profiles of PBMCs (peripheral blood mononuclear cells) before and at 12 time points over a period of four weeks after initial and booster vaccination at day 14 were studied by use of Affymetrix GeneChip microarrays and Ingenuity Pathway Analysis (IPA). The transcriptome data in total comprised more than 5000 genes with different transcript abundances (DE-genes). Within the single time stages the numbers of DE-genes were between several hundred and more than 1000. Ingenuity Pathway Analysis mainly revealed canonical pathways of cellular immune response and cytokine signaling as well as a broad range of processes in cellular and organismal growth, proliferation and development, cell signaling, biosynthesis and metabolism. Significant changes in the expression profiles of PBMCs already occurred very early after immune stimulation. At two hours after the first vaccination 679 DE-genes corresponding to 110 canonical pathways of cytokine signaling, cellular immune response and other multiple cellular functions were found. Immune competence and global disease resistance are heritable but difficult to measure and to address by breeding. Besides QTL mapping of immune traits gene expression profiling facilitates the detection of functional gene networks and thus functional candidate genes.

摘要

本研究的目的是描述体内对免疫刺激的全基因组转录反应,以便深入了解资源分配的变化。破伤风类毒素疫苗接种被用作猪混合 Th1 和 Th2 免疫反应的模型。使用 Affymetrix GeneChip 微阵列和 IPA(Ingenuity Pathway Analysis)分析了初始和加强免疫后第 14 天至 4 周内的 12 个时间点,研究了 PBMC(外周血单核细胞)的表达谱。转录组数据共包含 5000 多个具有不同转录丰度(差异表达基因)的基因。在单个时间阶段,差异表达基因的数量在几百到 1000 多个之间。IPA 主要揭示了细胞免疫反应和细胞因子信号的经典途径,以及细胞和机体生长、增殖和发育、细胞信号转导、生物合成和代谢等广泛的过程。在免疫刺激后非常早期,PBMC 的表达谱就发生了显著变化。第一次接种后两小时,发现了 679 个差异表达基因,这些基因对应于细胞因子信号、细胞免疫反应和其他多种细胞功能的 110 个经典途径。免疫能力和全球疾病抵抗力是可遗传的,但很难通过繁殖来衡量和解决。除了免疫性状的 QTL 定位外,基因表达谱分析还可以检测到功能基因网络,从而确定功能候选基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d6a7/3607572/aafc678a0662/pone.0058306.g001.jpg

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