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希瓦氏菌属一新种,从鱼类胃肠道中分离得到。

Paracoccus siganidrum sp. nov., isolated from fish gastrointestinal tract.

机构信息

College of Food Science and Technology, Guangdong Ocean University, Zhanjiang, 524088, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2013 May;103(5):1133-9. doi: 10.1007/s10482-013-9894-4. Epub 2013 Apr 2.

Abstract

A bacterial strain, designated M26(T), was isolated from a fish gastrointestinal tract, collected from Zhanjiang Port, South China. 16S rRNA gene sequence analysis indicated that strain M26(T) belongs to the subclass α-Proteobacteria, being related to the genus Paracoccus, and sharing highest sequence similarity with Paracoccus alcaliphilus JCM 7364(T) (98.1 %), Paracoccus huijuniae FLN-7(T) (97.3 %), Paracoccus stylophorae KTW-16(T) (97.1 %) and Paracoccus seriniphilus DSM 14827(T) (96.9 %). The major quinone was determined to be ubiquinone Q-10, with Q-9 and Q-8 as minor components. The major fatty acid was identified as C18:1ω7c, with smaller amounts of C18:0 and C16:0. The G+C content of the genomic DNA was determined to be 64.3 mol%. The DNA hybridization value between strain M26(T) and the most closely related type strain, P. alcaliphilus, was 29.0 ± 1.0 %. The results of physiological and biochemical tests and low DNA-DNA relatedness showed that the strain could be readily distinguished from closely related species. On the basis of these phenotypic and genotypic data, strain M26(T) is concluded to represent a novel species of the genus Paracoccus, for which the name Paracoccus siganidrum sp. nov. is proposed. The type strain is M26(T) (=CCTCC AB 2012865(T) = DSM 26381(T)).

摘要

一株细菌菌株,命名为 M26(T),从中国南方湛江港采集的鱼类胃肠道中分离得到。16S rRNA 基因序列分析表明,菌株 M26(T)属于 α-变形菌亚纲,与 Paracoccus 属有关,与 Paracoccus alcaliphilus JCM 7364(T)(98.1%)、Paracoccus huijuniae FLN-7(T)(97.3%)、Paracoccus stylophorae KTW-16(T)(97.1%)和 Paracoccus seriniphilus DSM 14827(T)(96.9%)的序列相似度最高。主要醌类为泛醌 Q-10,Q-9 和 Q-8 为次要成分。主要脂肪酸为 C18:1ω7c,少量 C18:0 和 C16:0。基因组 DNA 的 G+C 含量为 64.3mol%。菌株 M26(T)与最密切相关的模式菌株 P. alcaliphilus 的 DNA 杂交值为 29.0±1.0%。生理生化试验和低 DNA-DNA 同源性的结果表明,该菌株很容易与密切相关的种区分开来。基于这些表型和基因型数据,菌株 M26(T)被认为代表了 Paracoccus 属的一个新种,建议将其命名为 Paracoccus siganidrum sp. nov.。模式菌株为 M26(T)=CCTCC AB 2012865(T)=DSM 26381(T)。

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