Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
J Chem Phys. 2013 Apr 7;138(13):134109. doi: 10.1063/1.4797462.
The coupled transfer of electrons and protons is a central feature of biological and molecular catalysis, yet fundamental aspects of these reactions remain poorly understood. In this study, we extend the ring polymer molecular dynamics (RPMD) method to enable direct simulation of proton-coupled electron transfer (PCET) reactions across a wide range of physically relevant regimes. In a system-bath model for symmetric, co-linear PCET in the condensed phase, RPMD trajectories reveal distinct kinetic pathways associated with sequential and concerted PCET reaction mechanisms, and it is demonstrated that concerted PCET proceeds by a solvent-gating mechanism in which the reorganization energy is mitigated by charge cancellation among the transferring particles. We further employ RPMD to study the kinetics and mechanistic features of concerted PCET reactions across multiple coupling regimes, including the fully non-adiabatic (both electronically and vibrationally non-adiabatic), partially adiabatic (electronically adiabatic, but vibrationally non-adiabatic), and fully adiabatic (both electronically and vibrationally adiabatic) limits. Comparison of RPMD with the results of PCET rate theories demonstrates the applicability of the direct simulation method over a broad range of conditions; it is particularly notable that RPMD accurately predicts the crossover in the thermal reaction rates between different coupling regimes while avoiding a priori assumptions about the PCET reaction mechanism. Finally, by utilizing the connections between RPMD rate theory and semiclassical instanton theory, we show that analysis of ring-polymer configurations in the RPMD transition path ensemble enables the a posteriori determination of the coupling regime for the PCET reaction. This analysis reveals an intriguing and distinct "transient-proton-bridge" mechanism for concerted PCET that emerges in the transition between the proton-mediated electron superexchange mechanism for fully non-adiabatic PCET and the hydrogen atom transfer mechanism for partially adiabatic PCET. Taken together, these results provide a unifying picture of the mechanisms and physical driving forces that govern PCET across a wide range of physical regimes, and they raise the possibility for PCET mechanisms that have not been previously reported.
电子和质子的偶联转移是生物和分子催化的核心特征,但这些反应的基本方面仍未被很好地理解。在这项研究中,我们扩展了环聚合物分子动力学(RPMD)方法,以能够在广泛的物理相关范围内直接模拟质子偶联电子转移(PCET)反应。在凝聚相中对称共线 PCET 的体系-浴模型中,RPMD 轨迹揭示了与顺序和协同 PCET 反应机制相关的不同动力学途径,并证明协同 PCET 通过溶剂门控机制进行,其中转移粒子之间的电荷抵消减轻了重组能。我们进一步利用 RPMD 研究了跨越多个耦合范围的协同 PCET 反应的动力学和机制特征,包括完全非绝热(电子和振动均非绝热)、部分绝热(电子绝热,但振动非绝热)和完全绝热(电子和振动均绝热)。将 RPMD 与 PCET 速率理论的结果进行比较,证明了直接模拟方法在广泛的条件下的适用性;特别值得注意的是,RPMD 准确预测了不同耦合范围之间热反应速率的交叉,同时避免了对 PCET 反应机制的先验假设。最后,通过利用 RPMD 速率理论和半经典瞬时理论之间的联系,我们表明在 RPMD 过渡路径集合中的环聚合物构型分析能够在后验确定 PCET 反应的耦合范围。这种分析揭示了协同 PCET 中一种有趣且独特的“瞬态质子桥”机制,它出现在完全非绝热 PCET 的质子介导电子超交换机制和部分绝热 PCET 的氢原子转移机制之间的过渡中。总之,这些结果为跨越广泛物理范围的 PCET 机制和物理驱动力提供了一个统一的图景,并为以前未报道的 PCET 机制提供了可能性。