Secrier Maria, Schneider Reinhard
Brief Bioinform. 2014 Sep;15(5):771-82. doi: 10.1093/bib/bbt021. Epub 2013 Apr 12.
Time is of the essence in biology as in so much else. For example, monitoring disease progression or the timing of developmental defects is important for the processes of drug discovery and therapy trials. Furthermore, an understanding of the basic dynamics of biological phenomena that are often strictly time regulated (e.g. circadian rhythms) is needed to make accurate inferences about the evolution of biological processes. Recent advances in technologies have enabled us to measure timing effects more accurately and in more detail. This has driven related advances in visualization and analysis tools that try to effectively exploit this data. Beyond timeline plots, notable attempts at more involved temporal interpretation have been made in recent years, but awareness of the available resources is still limited within the scientific community. Here, we review some advances in biological visualization of time-driven processes and consider how they aid data analysis and interpretation.
时间在生物学中与在许多其他领域一样至关重要。例如,监测疾病进展或发育缺陷的发生时间对于药物发现和治疗试验过程很重要。此外,需要了解通常严格受时间调节的生物现象的基本动态(例如昼夜节律),以便对生物过程的演变做出准确推断。技术上的最新进展使我们能够更准确、更详细地测量时间效应。这推动了可视化和分析工具的相关进展,这些工具试图有效利用这些数据。除了时间线图,近年来还在进行更复杂的时间解释方面做出了显著尝试,但科学界对可用资源的认识仍然有限。在这里,我们回顾了时间驱动过程的生物可视化方面的一些进展,并考虑它们如何辅助数据分析和解释。