Blomberg Margareta R A, Siegbahn Per E M
Department of Organic Chemistry, Stockholm University, Stockholm, Sweden.
Biochim Biophys Acta. 2013 Jul;1827(7):826-33. doi: 10.1016/j.bbabio.2013.04.005. Epub 2013 Apr 23.
The membrane-bound enzyme cNOR (cytochrome c dependent nitric oxide reductase) catalyzes the reduction of NO in a non-electrogenic process. This is in contrast to the reduction of O2 in cytochrome c oxidase (CcO), the other member of the heme-copper oxidase family, which stores energy by the generation of a membrane gradient. This difference between the two enzymes has not been understood, but it has been speculated to be of kinetic origin, since per electron the NO reduction is more exergonic than the O2 reduction, and the energy should thus be enough for an electrogenic process. However, it has not been clear how and why electrogenicity, which mainly affects the thermodynamics, would slow down the very exergonic NO reduction. Quantum chemical calculations are used to construct a free energy profile for the catalytic reduction of NO in the active site of cNOR. The energy profile shows that the reduction of the NO molecules by the enzyme and the formation of N2O are very exergonic steps, making the rereduction of the enzyme endergonic and rate-limiting for the entire catalytic cycle. Therefore the NO reduction cannot be electrogenic, i.e. cannot take electrons and protons from the opposite sides of the membrane, since it would increase the endergonicity of the rereduction when the gradient is present, thereby increasing the rate-limiting barrier, and the reaction would become too slow. It also means that proton pumping coupled to electron transfer is not possible in cNOR. In CcO the corresponding rereduction of the enzyme is very exergonic.
膜结合酶cNOR(细胞色素c依赖性一氧化氮还原酶)在一个非产电过程中催化NO的还原。这与血红素-铜氧化酶家族的另一个成员细胞色素c氧化酶(CcO)中O2的还原形成对比,CcO通过产生膜电位来储存能量。这两种酶之间的这种差异一直未被理解,但据推测是动力学原因导致的,因为每转移一个电子,NO的还原比O2的还原放能更多,因此能量应该足以支持一个产电过程。然而,尚不清楚主要影响热力学的产电过程如何以及为何会减缓非常放能的NO还原。量子化学计算被用于构建cNOR活性位点催化还原NO的自由能剖面图。能量剖面图表明,酶对NO分子的还原以及N2O的形成是非常放能的步骤,使得酶的再还原是吸能的,并且是整个催化循环的限速步骤。因此,NO的还原不可能是产电的,即不能从膜的两侧获取电子和质子,因为当存在膜电位时,这会增加再还原的吸能性,从而增加限速屏障,反应会变得过于缓慢。这也意味着在cNOR中与电子转移偶联的质子泵浦是不可能的。在CcO中,酶的相应再还原是非常放能的。