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细菌脂氧合酶,酶的一个新亚科?系统发生学方法。

Bacterial lipoxygenases, a new subfamily of enzymes? A phylogenetic approach.

机构信息

Laboratori de Microbiologia, Facultat de Farmàcia, Universitat de Barcelona, Barcelona 08028, Spain.

出版信息

Appl Microbiol Biotechnol. 2013 Jun;97(11):4737-47. doi: 10.1007/s00253-013-4887-9. Epub 2013 Apr 27.

Abstract

Lipoxygenases (EC. 1.13.11.12) are a non-heme iron enzymes consisting of one polypeptide chain folded into two domains, the N-terminal domain and the catalytic moiety β-barrel domain. They catalyze the dioxygenation of 1Z,4Z-pentadiene moieties of polyunsaturated fatty acids obtaining hydroperoxy fatty acids. For years, the presence of lipoxygenases was considered a eukaryotic feature, present in mammals, plants, small marine invertebrates, and fungi, but now, some lipoxygenase sequences have been detected on prokaryotic organisms, changing the idea that lipoxygenases are exclusively a eukaryotic affair. Lipoxygenases are involved in different types of reactions on eukaryote organisms where the biological role and the structural characteristics of these enzymes are well studied. However, these aspects of the bacterial lipoxygenases have not yet been elucidated and are unknown. This revision discusses biochemical aspects, biological applications, and some characteristics of these enzymes and tries to determine the existence of a subfamily of bacterial lipoxygenases in the context of the phylogeny of prokaryotic lipoxygenases, supporting the results of phylogenetic analyzes with the comparison and discussion of structural information of the first prokaryotic lipoxygenase crystallized and other eukaryotic lipoxygenases structures.

摘要

脂氧合酶(EC 1.13.11.12)是一种非血红素铁酶,由一条折叠成两个结构域的多肽链组成,即 N 端结构域和催化结构域β桶结构域。它们催化多不饱和脂肪酸的 1Z,4Z-戊二烯部分的双加氧反应,生成过氧脂肪酸。多年来,脂氧合酶的存在被认为是真核生物的特征,存在于哺乳动物、植物、小型海洋无脊椎动物和真菌中,但现在,已经在原核生物中检测到一些脂氧合酶序列,这改变了脂氧合酶是真核生物特有的观点。脂氧合酶参与真核生物的不同类型的反应,这些酶的生物学作用和结构特征已经得到了很好的研究。然而,细菌脂氧合酶的这些方面尚未阐明,尚不清楚。本文综述了这些酶的生化方面、生物应用和一些特性,并试图在原核脂氧合酶的系统发育背景下确定细菌脂氧合酶的亚家族的存在,通过比较和讨论第一个原核脂氧合酶的结晶结构和其他真核脂氧合酶的结构信息,支持系统发育分析的结果。

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