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印度一个家族中三个家族性双侧嗜铬细胞瘤患者的希佩尔-林道(von Hippel-Lindau,VHL)基因 P.Arg82Leu 突变:分子分析与计算机模拟特征。

P.Arg82Leu von Hippel-Lindau (VHL) gene mutation among three members of a family with familial bilateral pheochromocytoma in India: molecular analysis and in silico characterization.

机构信息

Department of Endocrinology, Christian Medical College, Vellore, Tamil Nadu, India.

出版信息

PLoS One. 2013 Apr 23;8(4):e61908. doi: 10.1371/journal.pone.0061908. Print 2013.

Abstract

Various missense mutations in the VHL gene have been reported among patients with familial bilateral pheochromocytoma. However, the p.Arg82Leu mutation in the VHL gene described here among patients with familial bilateral pheochromocytoma, has never been reported previously in a germline configuration. Interestingly, long-term follow-up of these patients indicated that the mutation might have had little impact on the normal function of the VHL gene, since all of them have remained asymptomatic. We further attempted to correlate this information with the results obtained by in silico analysis of this mutation using SIFT, PhD-SNP SVM profile, MutPred, PolyPhen2, and SNPs&GO prediction tools. To gain, new mechanistic insight into the structural effect, we mapped the mutation on to 3D structure (PDB ID 1LM8). Further, we analyzed the structural level changes in time scale level with respect to native and mutant protein complexes by using 12 ns molecular dynamics simulation method. Though these methods predict the mutation to have a pathogenic potential, it remains to be seen if these patients will eventually develop symptomatic disease.

摘要

在家族性双侧嗜铬细胞瘤患者中,已经报道了 VHL 基因的各种错义突变。然而,在家族性双侧嗜铬细胞瘤患者中描述的 VHL 基因 p.Arg82Leu 突变,以前从未在种系构型中报道过。有趣的是,对这些患者的长期随访表明,该突变可能对 VHL 基因的正常功能影响不大,因为他们都没有出现症状。我们进一步尝试将此信息与使用 SIFT、PhD-SNP SVM 谱、MutPred、PolyPhen2 和 SNPs&GO 预测工具对该突变进行的计算机分析结果相关联。为了深入了解结构效应的机制,我们将突变映射到 3D 结构(PDB ID 1LM8)上。此外,我们使用 12ns 分子动力学模拟方法,分析了相对于天然和突变蛋白复合物在时间尺度水平上的结构水平变化。尽管这些方法预测该突变具有潜在的致病性,但这些患者最终是否会发展为有症状的疾病仍有待观察。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08e2/3633967/34648a5881aa/pone.0061908.g001.jpg

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