相似文献
1
BioBlend: automating pipeline analyses within Galaxy and CloudMan.
Bioinformatics. 2013 Jul 1;29(13):1685-6. doi: 10.1093/bioinformatics/btt199. Epub 2013 Apr 28.
2
BioBlend.objects: metacomputing with Galaxy.
Bioinformatics. 2014 Oct;30(19):2816-7. doi: 10.1093/bioinformatics/btu386. Epub 2014 Jun 12.
3
Goldilocks: a tool for identifying genomic regions that are 'just right'.
Bioinformatics. 2016 Jul 1;32(13):2047-9. doi: 10.1093/bioinformatics/btw116. Epub 2016 Mar 7.
4
blend4php: a PHP API for galaxy.
Database (Oxford). 2017 Jan 10;2017. doi: 10.1093/database/baw154. Print 2017.
5
Efficient population-scale variant analysis and prioritization with VAPr.
Bioinformatics. 2018 Aug 15;34(16):2843-2845. doi: 10.1093/bioinformatics/bty192.
6
Expanding the Galaxy's reference data.
Bioinform Adv. 2022 Apr 29;2(1):vbac030. doi: 10.1093/bioadv/vbac030. eCollection 2022.
7
ReGaTE: Registration of Galaxy Tools in Elixir.
Gigascience. 2017 Jun 1;6(6):1-4. doi: 10.1093/gigascience/gix022.
8
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.
Bioinformatics. 2023 Jan 1;39(1). doi: 10.1093/bioinformatics/btac747.
9
PHYLUCE is a software package for the analysis of conserved genomic loci.
Bioinformatics. 2016 Mar 1;32(5):786-8. doi: 10.1093/bioinformatics/btv646. Epub 2015 Nov 2.
10
PyIOmica: longitudinal omics analysis and trend identification.
Bioinformatics. 2020 Apr 1;36(7):2306-2307. doi: 10.1093/bioinformatics/btz896.
引用本文的文献
1
Galaxy QCxMS for straightforward semi-empirical quantum mechanical EI-MS prediction.
GigaByte. 2025 Jul 4;2025:gigabyte160. doi: 10.46471/gigabyte.160. eCollection 2025.
2
Identification of Strains from Animal Cases in Ethiopia and Genetic Characterization by Whole-Genome Sequencing.
Pathogens. 2025 Jan 7;14(1):39. doi: 10.3390/pathogens14010039.
3
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
BMC Genomics. 2025 Jan 8;26(1):20. doi: 10.1186/s12864-024-11182-5.
4
blast2galaxy: a CLI and Python API for BLAST+ and DIAMOND searches on Galaxy servers.
Bioinform Adv. 2024 Nov 22;4(1):vbae185. doi: 10.1093/bioadv/vbae185. eCollection 2024.
5
Platelet-Activating Factor Receptor (PAFR) Regulates Retinal Progenitor/Stem Cells Profile in Ciliary Epithelium Cells.
Int J Mol Sci. 2024 Mar 7;25(6):3084. doi: 10.3390/ijms25063084.
6
The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species.
Genome Biol Evol. 2023 Jul 3;15(7). doi: 10.1093/gbe/evad124.
7
Estimating the bias related to DNA recovery from hemp stems for retting microbial community investigation.
Appl Microbiol Biotechnol. 2023 Jul;107(14):4665-4681. doi: 10.1007/s00253-023-12582-5. Epub 2023 May 25.
8
An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy.
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad028. Epub 2023 Apr 26.
9
DivBrowse-interactive visualization and exploratory data analysis of variant call matrices.
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad025. Epub 2023 Apr 21.
10
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
Genome Res. 2023 Feb;33(2):261-268. doi: 10.1101/gr.276963.122. Epub 2023 Feb 24.
本文引用的文献
1
Next-generation sequencing data interpretation: enhancing reproducibility and accessibility.
Nat Rev Genet. 2012 Sep;13(9):667-72. doi: 10.1038/nrg3305.
2
Harnessing cloud computing with Galaxy Cloud.
Nat Biotechnol. 2011 Nov 8;29(11):972-4. doi: 10.1038/nbt.2028.
3
Galaxy CloudMan: delivering cloud compute clusters.
BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S4. doi: 10.1186/1471-2105-11-S12-S4.
Zotero 插件