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本文引用的文献

1
Thermal, autonomous replicator made from transfer RNA.由转移 RNA 制成的热、自主复制子。
Phys Rev Lett. 2012 Jun 8;108(23):238104. doi: 10.1103/PhysRevLett.108.238104. Epub 2012 Jun 4.
2
Label-free microscale thermophoresis discriminates sites and affinity of protein-ligand binding.无标记微尺度热泳技术可区分蛋白质-配体结合的位点和亲和力。
Angew Chem Int Ed Engl. 2012 Oct 15;51(42):10656-9. doi: 10.1002/anie.201204268. Epub 2012 Sep 24.
3
Genetics first or metabolism first? The formamide clue.先遗传还是先代谢?甲酰胺的线索。
Chem Soc Rev. 2012 Aug 21;41(16):5526-65. doi: 10.1039/c2cs35066a. Epub 2012 Jun 8.
4
Thermal diffusion of nucleotides.核苷酸的热扩散。
J Phys Chem B. 2012 Jun 28;116(25):7463-9. doi: 10.1021/jp3032644. Epub 2012 Jun 15.
5
Robust self-replication of combinatorial information via crystal growth and scission.通过晶体生长和断裂实现组合信息的稳健自复制。
Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6405-10. doi: 10.1073/pnas.1117813109. Epub 2012 Apr 9.
6
Generation of RNA molecules by a base-catalysed click-like reaction.通过碱基催化的类似点击反应生成 RNA 分子。
Chembiochem. 2012 May 7;13(7):999-1008. doi: 10.1002/cbic.201200068. Epub 2012 Mar 30.
7
Activated ribonucleotides undergo a sugar pucker switch upon binding to a single-stranded RNA template.活化的核糖核苷酸在与单链 RNA 模板结合时会发生糖构象转换。
J Am Chem Soc. 2012 Feb 29;134(8):3691-4. doi: 10.1021/ja212027q. Epub 2012 Feb 3.
8
Iron-sulfide-bearing chimneys as potential catalytic energy traps at life's emergence.含硫化亚铁的烟囱可能是生命起源时的催化能量陷阱。
Astrobiology. 2011 Dec;11(10):933-50. doi: 10.1089/ast.2011.0667. Epub 2011 Nov 23.
9
Emergence of information transmission in a prebiotic RNA reactor.前生物 RNA 反应器中信息传递的出现。
Phys Rev Lett. 2011 Jul 1;107(1):018101. doi: 10.1103/PhysRevLett.107.018101. Epub 2011 Jun 27.
10
Peptide surfactants for cell-free production of functional G protein-coupled receptors.用于无细胞体系生产功能性 G 蛋白偶联受体的肽表面活性剂。
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在热梯度中聚合的升级。

Escalation of polymerization in a thermal gradient.

机构信息

Systems Biophysics, Physics Department, Center for Nanoscience, Ludwig-Maximilians-Universität München, 80799 Munich, Germany.

出版信息

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8030-5. doi: 10.1073/pnas.1303222110. Epub 2013 Apr 29.

DOI:10.1073/pnas.1303222110
PMID:23630280
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3657786/
Abstract

For the emergence of early life, the formation of biopolymers such as RNA is essential. However, the addition of nucleotide monomers to existing oligonucleotides requires millimolar concentrations. Even in such optimistic settings, no polymerization of RNA longer than about 20 bases could be demonstrated. How then could self-replicating ribozymes appear, for which recent experiments suggest a minimal length of 200 nt? Here, we demonstrate a mechanism to bridge this gap: the escalated polymerization of nucleotides by a spatially confined thermal gradient. The gradient accumulates monomers by thermophoresis and convection while retaining longer polymers exponentially better. Polymerization and accumulation become mutually self-enhancing and result in a hyperexponential escalation of polymer length. We describe this escalation theoretically under the conservative assumption of reversible polymerization. Taking into account the separately measured thermophoretic properties of RNA, we extrapolate the results for primordial RNA polymerization inside a temperature gradient in pores or fissures of rocks. With a dilute, nanomolar concentration of monomers the model predicts that a pore length of 5 cm and a temperature difference of 10 K suffice to polymerize 200-mers of RNA in micromolar concentrations. The probability to generate these long RNAs is raised by a factor of >10(600) compared with polymerization in a physical equilibrium. We experimentally validate the theory with the reversible polymerization of DNA blocks in a laser-driven thermal trap. The results confirm that a thermal gradient can significantly enlarge the available sequence space for the emergence of catalytically active polymers.

摘要

为了生命的早期出现,生物聚合物如 RNA 的形成是必不可少的。然而,将核苷酸单体添加到现有的寡核苷酸中需要毫摩尔浓度。即使在这种乐观的环境下,也无法证明 RNA 长度超过约 20 个碱基的聚合。那么,自我复制的核酶是如何出现的呢?最近的实验表明,自我复制的核酶的最小长度约为 200 个核苷酸。在这里,我们展示了一种弥合这一差距的机制:通过空间限制的热梯度来实现核苷酸的逐步聚合。该梯度通过热泳和对流来积累单体,同时对数长聚合物的保留更好。聚合和积累相互增强,导致聚合物长度呈超指数级增长。在聚合可逆的保守假设下,我们从理论上描述了这种增长。考虑到 RNA 的单独测量的热泳性质,我们将结果外推到岩石孔隙或裂缝中原始 RNA 聚合的温度梯度内。在单体浓度为纳摩尔的稀溶液中,该模型预测,只要孔长为 5 厘米,温度差为 10 K,就足以在微摩尔浓度下聚合 200 个核苷酸的 RNA。与物理平衡下的聚合相比,生成这些长 RNA 的概率提高了 >10(600)倍。我们通过在激光驱动的热阱中可逆聚合 DNA 块来实验验证该理论。结果证实,热梯度可以显著扩大催化活性聚合物出现的可用序列空间。