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噬菌体 T7 中连接器结合诱导的大型末端酶构象变化。

Large terminase conformational change induced by connector binding in bacteriophage T7.

机构信息

Department of Macromolecular Structure, 28049 Madrid, Spain.

Computational Systems Biology Group, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049 Madrid, Spain.

出版信息

J Biol Chem. 2013 Jun 7;288(23):16998-17007. doi: 10.1074/jbc.M112.448951. Epub 2013 Apr 30.

Abstract

During bacteriophage morphogenesis DNA is translocated into a preformed prohead by the complex formed by the portal protein, or connector, plus the terminase, which are located at an especial prohead vertex. The terminase is a powerful motor that converts ATP hydrolysis into mechanical movement of the DNA. Here, we have determined the structure of the T7 large terminase by electron microscopy. The five terminase subunits assemble in a toroid that encloses a channel wide enough to accommodate dsDNA. The structure of the complete connector-terminase complex is also reported, revealing the coupling between the terminase and the connector forming a continuous channel. The structure of the terminase assembled into the complex showed a different conformation when compared with the isolated terminase pentamer. To understand in molecular terms the terminase morphological change, we generated the terminase atomic model based on the crystallographic structure of its phage T4 counterpart. The docking of the threaded model in both terminase conformations showed that the transition between the two states can be achieved by rigid body subunit rotation in the pentameric assembly. The existence of two terminase conformations and its possible relation to the sequential DNA translocation may shed light into the molecular bases of the packaging mechanism of bacteriophage T7.

摘要

在噬菌体形态发生过程中,DNA 通过位于特定头部顶点的门户蛋白(或连接器)和末端酶形成的复合物被转运到预先形成的头部中。末端酶是一种强大的马达,它将 ATP 水解转化为 DNA 的机械运动。在这里,我们通过电子显微镜确定了 T7 大末端酶的结构。五个末端酶亚基组装成一个环,环内有一个足够宽的通道,可容纳双链 DNA。完整连接器-末端酶复合物的结构也被报道,揭示了末端酶和连接器之间的耦合,形成了一个连续的通道。与分离的末端酶五聚体相比,组装成复合物的末端酶显示出不同的构象。为了从分子角度理解末端酶的形态变化,我们基于噬菌体 T4 末端酶的晶体结构生成了末端酶的原子模型。将穿线模型对接在两种末端酶构象中表明,通过五聚体组装中的刚性亚基旋转可以实现两种状态之间的转换。两种末端酶构象的存在及其与顺序 DNA 转运的可能关系可能揭示噬菌体 T7 包装机制的分子基础。

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